Job Description P10441 Confidence 99.78% Date Thu Jan 5 11:32:17 GMT 2012 Rank 37 Aligned Residues 297 % Identity 14% Template c2iv3B_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyltransferase; PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis Resolution 2.3 Å

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		6	.	.	.	10	.	.	.	.																	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Query Sequence		P	L	T	I	A	L	V	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	S	G	.	D	I	L	G	A	G	L	I	R	A	L	K	E	H	V	P	N	A	R	F	V	G	V	A	G	P	R	M	Q	A	E	G	C	E	A	W	Y	E	M	E	E	L	A	V	M	G	I	V	E	V
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	K	V	A	L	V	N	I	P	L	R	V	P	G	S	D	A	W	I	S	V	P	P	Q	G	Y	G	G	I	Q	W	V	V	A	N	L	M	D	G	L	L	E	L	G	H	E	V	F	L	L	G	A	P	S	P	G	R	P	G	L	T	V	V	P	A	G	E	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													B		T	T	S	S	S	B			S	S		S	S	S																	T	T							S							T	T					S			S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	L	R	R	L	L	H	I	R	A	D	L	T	K	R	F	G	E	L	K	P	D	V	F	V	G	I	D	A	P	D	F	N	I	T	L	E	G	N	L	K	K	Q	G	I	K	T	I	H	Y	V	S	P	S	V	W	A	W	R	Q	K	R	V	F	K	I	G	R	A	T	D	L	V	L	A	F	L	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	E	I	E	R	W	L	R	T	A	D	V	D	V	V	H	D	H	S	G	G	V	I	G	P	.	.	.	.	A	G	L	P	P	G	T	A	F	I	S	S	H	H	F	T	T	R	P	V	N	P	V	.	.	.	.	.	.	.	.	.	.	G	C	T	Y	S	S	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.													S						S	S	S	S	S		S	.	.	.	.	T	T			T	T									S	S	S			S			T	.	.	.	.	.	.	.	.	.	.	T				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
													84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	K	A	F	Y	D	K	Y	N	V	P	C	R	F	I	G	H	T	M	A	D	A	M	P	L	D	P	D	K	N	A	A	R	D	V	L	G	I	P	H	D	A	H	C	L	A	L	L	P	G	S	R	G	A	E	V	E	M	L	S	A	D	F	L	K	T	A	Q	L	L	R	Q	T	Y	P	D	L	E	I
Query Conservation
Alig confidence											.																			.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation											.																			.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template Sequence		A	Q	R	A	H	C	G	G	G	.	D	D	A	P	V	I	P	I	P	V	D	P	A	R	Y	R	S	A	.	.	.	.	.	.	.	.	.	.	.	A	D	Q	V	A	K	E	D	F	L	L	F	M	G	R	V	S	P	H	K	G	A	L	E	A	A	A	F	A	H	A	C	G	R	R	.	.	.	.	L	V
Template Known Secondary structure								T			.	T	T	S		B					B		G	G	G	S			G	.	.	.	.	.	.	.	.	.	.	.	G	G						S						S			S	G	G	G	T											T	T			.	.	.	.
Template Predicted Secondary structure											.																			.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.												.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.												.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	P	L	V	N	A	K	R	R	E	Q	F	E	R	I	K	A	E	V	A	P	D	L	S	V	H	L	L	D	G	M	G	R	E	A	M	V	A	S	D	A	A	L	L	A	S	G	T	.	.	.	.	.	.	.	.	.	.	.	A	A	L	E	C	M	L	A	K	C	P	M	V	V	G	Y	R	M	K	P
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		L	A	G	P	A	W	E	P	E	Y	F	D	E	I	T	R	R	Y	G	S	T	V	E	P	I	G	E	V	G	G	E	R	R	L	D	L	L	A	S	A	H	A	V	L	A	M	S	Q	A	V	T	G	I	W	C	E	P	G	A	T	V	V	S	E	A	A	V	S	G	T	P	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S																T	T	T						S														S																	S										T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	F	W	L	A	K	R	L	V	K	T	D	Y	V	S	L	P	N	L	L	A	G	R	E	L	V	K	E	L	L	Q	E	E	C	E	P	Q	K	L	A	A	A	L	L	P	L	L	A	N	G	K	T	S	H	A	M	H	D	T	F	R	E	L	H	Q	Q	I	R	C	N	A	D	E	Q	A	A	Q	A	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.										.																													.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																.	.	.	.										.																													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	V	V	G	T	G	N	G	C	L	A	E	I	V	P	S	.	.	.	.	V	G	E	V	V	G	Y	G	T	.	D	F	A	P	D	E	A	R	R	T	L	A	G	L	P	A	S	D	E	V	R	R	A	A	V	R	L	W	.	.	.	.	.	.	G	H	V	T	I	A	E	R	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.						S	T	T					G	G	G	.	.	.	.	T						S	S	S	.													T	S															.	.	.	.	.	.	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.	.	.										.																													.	.	.	.	.	.
Template SS confidence
										278	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.
		378	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	L	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	Q	Y	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions