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Job DescriptionP23872
Confidence99.88%DateThu Jan 5 11:40:10 GMT 2012
Rank50Aligned Residues243
% Identity11%Templatec3fnbB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:acylaminoacyl peptidase smu_737; PDBTitle: crystal structure of acylaminoacyl peptidase smu_737 from2 streptococcus mutans ua159
Resolution2.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120........ .130....
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Query Sequence  EMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPE. . ARFPQA
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Template Sequence  KIPLKSIEVPFEGELLPGYAIISEDKAQDTLIVVGGGD. . . TSREDLFYXLGYSGWEHDYNVLXVDLPGQGKNPNQGLHF
Template Known Secondary structure  S


TT

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SS...

TTT


TTSTTGGGGT


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   129130.........140.........150.........160...... ...170.........180.........190.........200.....
 
   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  IEEIVAACCYFHQQAEDYQINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWD
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Template Sequence  EVDARAAISAILDWY. . . QAPTEKIAIAGFSGGGYFTAQAVEK. . . . . . . DKRIKAWIASTPIYDVAEVFRISFSVNKVA
Template Known Secondary structure 
S
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S
T


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   206...210.........220 .........230.........240..... ....250.........260.........270.....
 
   215....220.........230.........240.........250.........260...... ...270.........280........
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Query Sequence  GLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLD. . DSRLLYQTLAAHQQPCEFKLYP. . . .
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Template Sequence  EVNLNKYAWQFGQVDFITSVNEVLEQA. QIVDYNKIDVPSLFLVGAGEDSELXRQSQVLYDNFKQRGIDVTLRKFSSESG
Template Known Secondary structure  TSS

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   295....300.........310.........320. ........330.........340.........350.........360.........370...
 
   289290.........300.........310.........
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Query Sequence  GTLHAFLHYSRMMKTADEALRDGAQFFTAQL
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Template Sequence  ADAHC. . . . . . QVNNFRLXHYQVFEWLNHIF
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SGG......GGGG
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   374.... .380.........390........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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