Job Description P23872 Confidence 99.94% Date Thu Jan 5 11:40:10 GMT 2012 Rank 33 Aligned Residues 240 % Identity 15% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		59	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure														.												.	.	.	.																																																		.	.	.
Query SS confidence														.												.	.	.	.																																																		.	.	.
Query Sequence		A	T	R	A	Y	M	V	P	T	K	Y	G	.	Q	V	E	T	R	L	F	C	P	Q	P	.	.	.	.	D	S	P	A	T	L	F	Y	L	H	G	G	G	F	I	L	G	N	L	D	T	H	D	R	I	M	R	L	L	A	S	Y	S	Q	C	T	V	I	G	I	D	Y	T	L	S	P	E	A	R	.	.	.
Query Conservation														.												.	.	.	.																																																		.	.	.
Alig confidence														.												.	.	.	.																										.							.																	.	.	.
Template Conservation																																																							.							.
Template Sequence		Q	V	E	Q	V	F	Y	A	S	K	D	G	T	K	V	P	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	.	L	P	W	L	D	A	.	G	G	V	Y	A	V	A	N	L	R	G	G	G	E	Y	G	K	A	W
Template Known Secondary structure											T	T	S											T	T				S	S												T	T									G	G	G	.						T	.	T									T	T	S	S	T	T
Template Predicted Secondary structure																																																							.							.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
							131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	F	P	Q	A	I	E	E	I	V	A	A	C	C	Y	F	H	Q	Q	A	E	D	Y	Q	I	N	M	S	R	I	G	F	A	G	D	S	A	G	A	M	L	A	L	A	S	A	L	W	L	R	D	K	Q	I	D	C	G	K	V	A	G	V	L	L	W	Y	G	L	Y	G	L	R	D	S	V	T
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		H	D	A	G	R	L	D	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A	A	M	T	Q	.	.	.	.	.	.	R	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V	R	Y	H	L
Template Known Secondary structure				T	T	S	G	G	G	T																	T	T	S			G	G	G							T													.	.	.	.	.	.		G	G	G		S						S					T	T	T	G	G	G
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.							.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																	.	.															.	.
Query SS confidence																																																	.	.															.	.
Query Sequence		R	R	L	L	G	G	V	W	D	G	L	T	Q	Q	D	L	Q	M	Y	E	E	A	Y	L	S	N	D	A	D	R	E	S	P	Y	Y	C	L	F	N	N	D	L	T	R	E	V	P	.	.	P	C	F	I	A	G	A	E	F	D	P	L	L	D	.	.	D	S	R	L	L	Y	Q	T	L	A	A	H	Q	Q	P
Query Conservation																																																	.	.															.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																															.	.															.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	S	G	R	T	W	.	.	.	.	.	.	.	.	.	.	I	P	E	Y	G	T	A	E	K	P	E	D	F	K	T	L	H	A	Y	S	P	Y	H	H	V	R	P	D	V	R	Y	P	A	L	L	M	M	A	A	D	H	D	D	R	V	D	P	M	H	A	R	K	F	V	A	A	V	Q	N	S	P	G	N
Template Known Secondary structure		S	T	T	G	G	G	G	.	.	.	.	.	.	.	.	.	.							T	T	S												G	G	G				S	S												T	T		S	S	S		T												T	S	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		568	.	570	.	.	.	.											.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
					282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	C	E	F	K	L	Y	P	G	T	L	H	A	F	L	H	Y	S	R	M	M	K	T	A	D	E	A	L	R	D	G	A	Q	F	F	T	A	Q	L
Query Conservation		.	.	.
Alig confidence		.	.	.														.	.	.
Template Conservation																		.	.	.
Template Sequence		P	A	T	A	L	L	R	I	E	A	N	A	G	H	G	G	.	.	.	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y	S	F	L	F	Q	V	L
Template Known Secondary structure			S								T	T		B	T	T	B	.	.	.		S																				T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.				.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions