Job Description P23872 Confidence 99.90% Date Thu Jan 5 11:40:10 GMT 2012 Rank 47 Aligned Residues 239 % Identity 14% Template c1yr2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity Resolution 1.80 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																			.												.	.
Query SS confidence																			.												.	.
Query Sequence		G	A	P	E	M	A	T	R	A	Y	M	V	P	T	K	Y	G	.	Q	V	E	T	R	L	F	C	P	Q	P	.	.	D	S	P	A	T	L	F	Y	L	H	G	G	G	F	I	L	G	N	L	D	T	H	D	R	I	M	R	L	L	A	S	Y	S	Q	C	T	V	I	G	I	D	Y	T	L	S	P	E	A	R
Query Conservation																			.												.	.
Alig confidence																			.												.	.																										.							.
Template Conservation																																																										.							.
Template Sequence		D	P	A	D	F	R	V	E	Q	V	F	Y	P	S	K	D	G	T	K	V	P	M	F	I	V	R	R	K	D	A	K	G	P	L	P	T	L	L	Y	G	Y	G	G	F	N	V	A	L	T	P	W	F	S	A	G	F	.	M	T	W	I	D	S	.	G	G	A	F	A	L	A	N	L	R	G	G	G	E	Y	G
Template Known Secondary structure			G	G	G											T	T	S											T	T			S												T	T												.					T	T	.	T									T	T	S	S	T	T
Template Predicted Secondary structure																																																										.							.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
										131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	F	P	Q	A	I	E	E	I	V	A	A	C	C	Y	F	H	Q	Q	A	E	D	Y	Q	I	N	M	S	R	I	G	F	A	G	D	S	A	G	A	M	L	A	L	A	S	A	L	W	L	R	D	K	Q	I	D	C	G	K	V	A	G	V	L	L	W	Y	G	L	Y	G	L	R	D
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																.	.	.	.	.	.																		.	.
Template Conservation																																																									.	.	.	.	.	.																		.	.
Template Sequence		D	A	W	H	D	A	G	R	R	D	K	K	Q	N	V	F	D	D	F	I	A	A	G	E	W	L	I	A	N	G	V	T	P	R	H	G	L	A	I	E	G	G	S	N	G	G	L	L	I	G	A	V	T	N	Q	.	.	.	.	.	.	R	P	D	L	F	A	A	A	S	P	A	V	G	V	M	D	M	.	.
Template Known Secondary structure							T	T	S	G	G	G	T																	T	T	S	S		T	T								T													.	.	.	.	.	.		G	G	G		S						S					T	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.																		.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.							.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.															.	.
Query SS confidence																																																				.	.															.	.
Query Sequence		S	V	T	R	R	L	L	G	G	V	W	D	G	L	T	Q	Q	D	L	Q	M	Y	E	E	A	Y	L	S	N	D	A	D	R	E	S	P	Y	Y	C	L	F	N	N	D	L	T	R	E	V	P	.	.	P	C	F	I	A	G	A	E	F	D	P	L	L	D	.	.	D	S	R	L	L	Y	Q	T	L	A	A	H
Query Conservation																																																				.	.															.	.
Alig confidence		.	.	.	.	.	.																				.	.																								.	.															.	.
Template Conservation		.	.	.	.	.	.																				.	.
Template Sequence		.	.	.	.	.	.	L	R	F	D	Q	F	T	A	G	R	Y	W	V	D	D	Y	G	Y	P	.	.	E	K	E	A	D	W	R	V	L	R	R	Y	S	P	Y	H	N	V	R	S	G	V	D	Y	P	A	I	L	V	T	T	A	D	T	D	D	R	V	V	P	G	H	S	F	K	Y	T	A	A	L	Q	T	A
Template Known Secondary structure		.	.	.	.	.	.	T	S	G	G	G	S	T	T	G	G	G	G							T	.	.	T	S									T	T		G	G	G				T	T	S											S			S	S	S		T													S
Template Predicted Secondary structure		.	.	.	.	.	.																				.	.
Template SS confidence
								605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.			.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	P	C	E	F	K	L	Y	P	G	T	L	H	A	F	L	H	Y	S	R	M	M	K	T	A	D	E	A	L	R	D	G	A	Q	F	F	T	A	Q	L
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	G	P	K	P	H	L	I	R	I	E	P	I	D	.	.	.	.	.	.	.	.	.	K	Q	I	E	E	T	A	D	V	Q	A	F	L	A	H	F	T
Template Known Secondary structure					S	S											.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Template SS confidence
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.										.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions