Job Description P23872 Confidence 99.96% Date Thu Jan 5 11:40:10 GMT 2012 Rank 27 Aligned Residues 241 % Identity 11% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.																		.
Query SS confidence																														.	.	.	.																		.
Query Sequence		G	A	P	E	M	A	T	R	A	Y	M	V	P	T	K	Y	G	Q	V	E	T	R	L	F	C	P	Q	P	.	.	.	.	D	S	P	A	T	L	F	Y	L	H	G	G	G	F	I	L	G	.	N	L	D	T	H	D	R	I	M	R	L	L	A	S	Y	S	Q	C	T	V	I	G	I	D	Y	T	L	S	P	E
Query Conservation																														.	.	.	.																		.
Alig confidence																														.	.	.	.																		.
Template Conservation
Template Sequence		D	R	Q	M	P	K	V	E	Y	R	D	I	E	I	D	D	Y	N	L	P	M	Q	I	L	K	P	A	T	F	T	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F
Template Known Secondary structure		T	S				B			B						T	T						B			B		S	S			S	S	S												T	T											S								T	T										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
		129												130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	.	.	R	F	P	Q	A	I	E	E	I	V	A	A	C	C	Y	F	H	Q	Q	A	E	D	Y	Q	I	N	M	S	R	I	G	F	A	G	D	S	A	G	A	M	L	A	L	A	S	A	L	W	L	R	D	K	Q	I	D	C	G	K	V	A	G	V	L	L	W	Y	G	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																					.	.	.																					.	.
Template Conservation																																		.	.	.																					.	.
Template Sequence		Q	G	T	K	L	L	H	E	V	R	R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	.	.	.	Y	I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	.	.	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I
Template Known Secondary structure		S							T	T	T	T		T	T	T															S	S	S	.	.	.	S												T								.	.						S	S	S	T	T					S						S
Template Predicted Secondary structure																																		.	.	.																					.	.
Template SS confidence
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.				700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.			720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																								.												.	.
Query SS confidence																																																								.												.	.
Query Sequence		Y	G	L	R	D	S	V	T	R	R	L	L	G	G	V	W	D	G	L	T	Q	Q	D	L	Q	M	Y	E	E	A	Y	L	S	N	D	A	D	R	E	S	P	Y	Y	C	L	F	N	N	D	L	T	R	E	V	.	P	P	C	F	I	A	G	A	E	F	D	.	.	P	L	L	D	D	S	R	L	L	Y	Q	T
Query Conservation																																																								.												.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.												.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	F	K	L	Y	A	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	E	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q
Template Known Secondary structure				T	T	S	S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	S			S	S	T	T	T	S		T					T	S			S									T	T		S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		743	.	.	.	.	.	.	750	.																	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	H	Q	Q	P	C	E	F	K	L	Y	P	G	T	L	H	A	F	L	H	Y	S	R	M	M	K	T	A	D	E	A	L	R	D	G	A	Q	F	F	T	A	Q	L
Query Conservation
Alig confidence																							.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	.	.	.	.	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E	C	F
Template Known Secondary structure					T	T									T	T			S	S			.	.	.	.																	T	T	T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		807	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.					.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions