Return to main results Retrieve Phyre Job Id

Job DescriptionP31463
Confidence100.00%DateThu Jan 5 11:47:52 GMT 2012
Rank5Aligned Residues286
% Identity12%Templatec3t1bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 













Query SS confidence 















































































Query Sequence  LDLNLLLCLQLLMQERSVTKAAKRINVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLD
Query Conservation   

  
  
  
   

 
 

  
 


 


  
  

  

  

 
      

  
  
       
        
Alig confidence 















































































Template Conservation 
 
  
  
  
   

 
 

  
 


 


  
  

  

  

 
   
  

  
  
   
            
Template Sequence  MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTE
Template Known Secondary structure 

SS


T




SSS

Template Predicted Secondary structure 














Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   88.90..... ....100.........110.........120.........130.........140.........150.........160......
Predicted Secondary structure 


.























Query SS confidence 







.






































































Query Sequence  KPHHQTPR. GLKFELAAESPLMMIMLNALSKQIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSL
Query Conservation          .                                             
  
  

 
                
Alig confidence 







.









































...




















.....
Template Conservation                                                     ...                     .....
Template Sequence  EITDECRGASGRIRISAPSELTKRMMMPMFNAFMEKYPDIHIELMMSNQAD. . . LDPTEWDVIFRVGPQRDSSLI. . . . .
Template Known Secondary structure  S

S

TTTTTTT
TT
SS

...

STT
SS





S.....
Template Predicted Secondary structure 

























...















.....
Template SS confidence 















































































   81........90.........100.........110.........120.........130. ........140.........150..
 
   167..170.........180.........190.... .....200.........210.........220.........230.........240.....
Predicted Secondary structure 














.


















Query SS confidence 



























.


















































Query Sequence  PLAIDYEVLFSDVPCVWLRKDHPALHQT. WNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQSLFMA
Query Conservation                              .    

     
                                     
 
Alig confidence  .....






















.





















.



























Template Conservation  .....                             
     
          .                           
Template Sequence  . . . . . ARKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQL. TNSQGETVVNSDRGRFQASALNVVRSAC
Template Known Secondary structure  .....

S


SSGGGGGGS
TT

S.
TTS




SSS
Template Predicted Secondary structure  .....
































.







Template SS confidence 















































































   154.....160.........170.........180.........190......... 200.........210.........220.......
 
   246...250.........260.........270.........280.........290.........300.........310.....
Predicted Secondary structure 


























Query SS confidence 





































































Query Sequence  AQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLY
Query Conservation      
  
   
             
   
              
 
         
    
   
    
Alig confidence 









...

















.....

































Template Conservation    
 

  

...            
     .....          
              
   
    
Template Sequence  SEGLGITLMP. . . DVMLREFLEDGSLVQVLS. . . . . DWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYH
Template Known Secondary structure  TT

...GGGTTSS

T.....T
B





SS

S
Template Predicted Secondary structure 


...




.....













Template SS confidence 





































































   228.230....... ..240.........250..... ....260.........270.........280.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions