Job Description P31463 Confidence 99.63% Date Thu Jan 5 11:47:52 GMT 2012 Rank 31 Aligned Residues 202 % Identity 15% Template c3n6uA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate Resolution 1.87 Å

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		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	K	F	E	L	A	A	E	S	P	L	M	M	I	M	L	N	A	L	S	K	Q	I	Y	Q	R	Y	P	Q	A	T	I	K	L	R	N	.	W	D	Y	D	S	L	D	A	I	T	R	G	E	V	D	I	G	F	S	G	R	E	S	H	P	R	S	R	E	L	L	S	S	L	P	L	A	I	D	Y	E	V	L
Query Conservation																																						.
Alig confidence																																						.																															.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		G	H	I	T	F	A	A	S	P	A	I	A	L	A	A	L	P	L	A	L	A	S	F	A	R	E	F	P	D	V	T	V	N	V	R	D	G	M	Y	P	A	V	S	P	Q	L	R	D	G	T	L	D	F	A	L	T	A	A	H	K	H	D	I	D	T	D	L	.	.	.	.	.	.	.	.	.	E	A	Q	P
Template Known Secondary structure															T														T	T										T	T	T	T						T	T	S		S								G	G	G	S		T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.										.	160	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		F	S	D	V	P	C	V	W	L	R	K	D	H	P	A	L	H	Q	T	W	N	L	D	T	F	L	R	Y	P	H	I	S	I	C	W	E	Q	S	D	T	W	A	L	D	N	V	L	Q	E	L	G	R	E	R	.	T	I	A	M	S	L	P	E	F	E	Q	S	L	F	M	A	A	Q	P	D	N	L	L	L	A
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		L	Y	V	S	D	V	V	I	V	G	Q	R	Q	H	P	M	A	N	A	T	R	L	A	E	L	Q	E	C	R	W	A	F	S	S	A	P	R	G	P	G	A	I	I	R	N	A	F	A	R	Y	G	L	P	E	P	K	L	G	L	V	C	E	S	F	L	A	L	P	G	V	V	A	H	S	D	L	L	T	T	M
Template Known Secondary structure													T	T		T	T	T	T			S	G	G	G	G	T	T	S								T	T	S	T	T										T	T													T	T	T							T	S	S		B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	P	R	Y	C	Q	Y	Y	N	Q	L	H	Q	L	P	L	V	A	L	P	L	P	F	D	E	S	Q	Q	K	K	L	E	V	P	F	T	L	L	W	H	K	R	N	S	H	N	P	K	I	V	W	L	R	E	T	I	K	N	L	Y
Query Conservation
Alig confidence			.	.	.																			.	.	.	.	.
Template Conservation			.	.	.																			.	.	.	.	.
Template Sequence		P	.	.	.	R	T	L	Y	E	R	N	A	F	K	D	Q	L	C	S	I	P	L	.	.	.	.	.	Q	D	A	L	P	N	P	T	I	Y	V	L	R	R	H	D	L	P	V	T	P	A	A	A	G	L	I	R	W	I	Q	H	H	A
Template Known Secondary structure			.	.	.						S	S	T	T	G	G	G							.	.	.	.	.		S													T	T	S																	T
Template Predicted Secondary structure			.	.	.																			.	.	.	.	.
Template SS confidence
		243				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions