Job Description P31463 Confidence 24.64% Date Thu Jan 5 11:47:52 GMT 2012 Rank 443 Aligned Residues 221 % Identity 8% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	G	L	K	F	E	L	A	A	E	S	P	L	M	M	I	M	L	N	A	L	S	K	Q	I	Y	Q	R	Y	P	Q	A	T	I	K	L	R	N	W	D	Y	D	S	L	D	A	I	T	R	G	E	V	D	I	G	F	S	G	R	E	S	H	P	R	S	R	E	L	L	S	S	L	P	L	A	I	D	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	C	G	T	V	R	F	S	D	V	G	W	T	D	I	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T	V
Template Known Secondary structure					S								S		T	T															T	T														T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		174	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure								.																							.	.	.	.	.	.
Query SS confidence								.																							.	.	.	.	.	.
Query Sequence		V	L	F	S	D	V	.	P	C	V	W	L	R	K	D	H	P	A	L	H	Q	T	W	N	L	D	T	F	L	.	.	.	.	.	.	R	Y	P	H	I	S	I	C	W	E	Q	S	D	T	W	A	L	D	N	V	L	Q	E	L	G	R	E	R	T	I	A	M	S	L	P	E	F	E	Q	S	L	F	M	A	A
Query Conservation								.																							.	.	.	.	.	.
Alig confidence								.																							.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q	V
Template Known Secondary structure																						T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		247	.	.							250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.								.	310	.	.
Predicted Secondary structure					.	.	.	.	.	.																																										.																			.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																																										.																			.	.	.	.	.	.	.
Query Sequence		Q	P	D	.	.	.	.	.	.	N	L	L	L	A	T	A	P	R	Y	C	Q	Y	Y	N	Q	L	H	Q	L	P	L	V	A	L	P	L	P	F	D	E	S	Q	Q	K	K	L	E	V	P	F	.	T	L	L	W	H	K	R	N	S	H	N	P	K	I	V	W	L	R	.	.	.	.	.	.	.	E	T	I	K
Query Conservation					.	.	.	.	.	.																																										.																			.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.										.	.	.	.	.																												.																			.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	.	.	.	.	.	P	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N	L	S	F	S	L	Q	M	E	N
Template Known Secondary structure					T	T	T	T										S	S	.	.	.	.	.	G	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		313	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	Y	A	S	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	M	G	K	I	L
Template Known Secondary structure					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions