Job Description P31463 Confidence 99.22% Date Thu Jan 5 11:47:52 GMT 2012 Rank 37 Aligned Residues 181 % Identity 13% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	L	A	A	E	S	P	L	M	M	I	M	L	N	A	L	S	K	Q	I	Y	Q	R	Y	P	Q	A	T	I	K	L	R	N	W	D	Y	D	S	L	D	A	I	T	R	G	E	V	D	I	G	F	S	G	R	E	S	H	P	R	S	R	E	L	L	S	S	L	P	L	A	I	D	Y	E	V	L	F	S	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	G	A	.	.	.	.	.	.	V	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	.	.	.	.	.	.	.	.	.	.	S	Q	L	L	C	E	E
Template Known Secondary structure														T													T	T										S		.	.	.	.	.	.					S								S		S			T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.											.	.	.	.	.	80	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	C	V	W	L	R	K	D	H	P	A	L	H	Q	T	W	N	L	D	T	F	L	R	Y	P	H	I	S	I	C	W	E	Q	S	D	T	W	A	L	D	N	V	L	Q	E	L	G	R	E	R	T	I	A	M	S	L	P	E	F	E	Q	S	L	F	M	A	A	Q	P	D	N	L	L	L	A	T	A	P	R
Query Conservation
Alig confidence													.	.	.	.	.	.																.	.	.																					.
Template Conservation													.	.	.	.	.	.																.	.	.																					.
Template Sequence		T	L	L	L	I	G	N	T	N	L	P	.	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	Q	T	T	.	.	.	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	.	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X
Template Known Secondary structure									T	T	S		.	.	.	.	.	.				G	G	G	G	S		B			B	T	T	.	.	.		T														B		S			.	B	S	S										T	T			B
Template Predicted Secondary structure													.	.	.	.	.	.																.	.	.																					.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	Q	Y	Y	N	Q	L	H	Q	L	P	L	V	A	L	P	L	P	F	D	E	S	Q	Q	K	K	L	E	V	P	F	T	L	L	W	H	K	R	N	S	H	N	P	K	I	V	W	L	R	E	T	I	K	N
Query Conservation
Alig confidence				.	.	.														.	.	.	.	.
Template Conservation				.	.	.														.	.	.	.	.
Template Sequence		A	Q	.	.	.	F	S	I	L	R	G	D	I	Q	H	I	G	N	.	.	.	.	.	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D
Template Known Secondary structure				.	.	.					T	T	S							.	.	.	.	.															G	G	G	T	T
Template Predicted Secondary structure				.	.	.														.	.	.	.	.
Template SS confidence
		163	.				.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions