Return to main results Retrieve Phyre Job Id

Job DescriptionP31463
Confidence28.98%DateThu Jan 5 11:47:52 GMT 2012
Rank425Aligned Residues56
% Identity16%Templatec2gajA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60.........70...... ...80.........90...
Predicted Secondary structure 







.........
Query SS confidence 









































. . . . . . . . .
















Query Sequence  TPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLA. . . . . . . . . EWMQMSNLLLDKPHHQT
Query Conservation 

 


  
  

  

  

 
      

  
  
     .........  
              
Alig confidence 














...























.........
















Template Conservation 
 



 


 
  
... 

      
 

  
  
   
      
     

  
  
  
  
 
Template Sequence  RPSTYASTIKLLLNR. . . GYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGK
Template Known Secondary structure 
TTTT...TSTTBSTTTTSTTS
Template Predicted Secondary structure 




...













Template SS confidence 



































































   461........470..... ....480.........490.........500.........510.........520.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions