Return to main results Retrieve Phyre Job Id

Job DescriptionP31463
Confidence100.00%DateThu Jan 5 11:47:52 GMT 2012
Rank4Aligned Residues289
% Identity13%Templatec1iz1B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  LDLNLLLCLQLLMQERSVTKAAKRINVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLD
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Template Sequence  MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGD
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   88.90. ........100.........110.........120.........130.. .......140.........150.........160.....
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Query Sequence  KPHH. QTPRGLKFELAAESPLMMIMLNALSKQIYQRYPQATIKLRN. WDYDSLDAITRGEVDIGFSGRESHPRSRELLSS
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Template Sequence  RSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIE. . . .
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SGGGGTSTT

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   81........90.........100.........110.........120.........130.........140.........150......
 
   166...170.........180.........190.... .....200.........210... ......220.........230.........240..
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Query Sequence  LPLAIDYEVLFSDVPCVWLRKDHPALHQT. WNLDTFLRYPHISICWEQS. . DTWALDNVLQELGRERTIAMSLPEFEQSL
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Template Sequence  . . . . . . IVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAAL
Template Known Secondary structure  ......GGGGGGTTT
GGGGTTS

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   157..160.........170.........180.........190.........200.........210.........220.........230
 
   243......250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  FMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYAS
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Template Sequence  ALTMAGAASSIVP. . . ASVAAIRWPDIAFARI. . . . . . . VGTRVKVPISCIFRKEK. QPPILARFVEHVRRSAKD
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   231........240... ......250......... 260.........270...... ...280.........290....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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