Job Description P31463 Confidence 99.69% Date Thu Jan 5 11:47:52 GMT 2012 Rank 21 Aligned Residues 202 % Identity 11% Template c1al3A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes Resolution 1.80 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		P	R	G	L	K	F	E	L	A	A	E	S	P	L	M	M	I	M	L	N	A	L	S	K	Q	I	Y	Q	R	Y	P	Q	A	T	I	K	L	R	N	.	W	D	Y	D	S	L	D	A	I	T	R	G	E	V	D	I	G	F	S	G	R	E	S	H	P	R	S	R	E	L	L	S	S	L	P	L	A	I	D	Y
Query Conservation																																									.
Alig confidence																																									.																															.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.
Template Sequence		P	D	K	G	S	L	Y	V	A	T	T	H	T	Q	A	R	Y	A	L	P	G	V	I	K	G	F	I	E	R	Y	P	R	V	S	L	H	M	H	Q	G	S	P	T	Q	I	A	E	A	V	S	K	G	N	A	D	F	A	I	A	T	E	A	L	H	L	Y	D	D	L	V	.	.	.	.	.	.	.	.	.	M
Template Known Secondary structure																			T	S												T																				T	T			S					S	S				T	T	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.										160
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		E	V	L	F	S	D	V	P	C	V	W	L	R	K	D	H	P	A	L	H	Q	T	.	W	N	L	D	T	F	L	R	Y	P	H	I	S	I	C	W	E	Q	S	D	T	W	A	L	D	N	V	L	Q	E	L	G	R	E	R	T	I	A	M	S	L	P	E	F	E	Q	S	L	F	M	A	A	Q	P	D	N	L
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		L	P	C	Y	H	W	N	R	S	I	V	V	T	P	E	H	P	L	A	T	K	G	S	V	S	I	E	E	L	A	Q	Y	P	L	V	T	Y	T	F	G	F	T	G	R	S	E	L	D	T	A	F	N	R	A	G	L	T	P	R	I	V	F	T	A	T	D	A	D	V	I	K	T	Y	V	R	L	G	L	G	V
Template Known Secondary structure															T	T	S	T	T	T	T	T	S									T	S							T	T	S	T	T												T										S	S											T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	T	A	P	R	Y	C	Q	Y	Y	N	Q	L	H	Q	L	P	L	V	A	L	P	L	P	F	D	E	S	Q	Q	K	K	L	E	V	P	F	T	L	L	W	H	K	R	N	S	H	N	P	K	I	V	W	L	R	E	T	I	K	N
Query Conservation
Alig confidence										.	.	.	.														.	.	.	.	.
Template Conservation										.	.	.	.														.	.	.	.	.
Template Sequence		G	V	I	A	S	M	A	V	.	.	.	.	D	P	V	S	D	P	D	L	V	K	L	D	A	.	.	.	.	.	N	G	I	F	S	H	S	T	T	K	I	G	F	R	R	S	T	F	L	R	S	Y	M	Y	D	F	I	Q	R	F	A	P
Template Known Secondary structure						G	G	G		.	.	.	.		T	T	T		T	T	S						.	.	.	.	.	B	T	T	B											T	T																T
Template Predicted Secondary structure										.	.	.	.														.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions