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Job DescriptionP0A698
Confidence100.00%DateThu Jan 5 11:02:38 GMT 2012
Rank3Aligned Residues785
% Identity44%Templatec2vf7B_
PDB info PDB header:dna-binding proteinChain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  DKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSP
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Template Conservation    
 
 

   


 
   

     
 

 












  
  
   
  
   
        
 

 
 

 
Template Sequence  GFVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARRLFNQAGVPDVDAIDGLPP
Template Known Secondary structure 

STT

SSSS
TTSSTTTSTTTTSSSTTS




SS


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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  AISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGE
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Template Conservation   
 
 
       





 
 
   

 
    
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Template Sequence  AVALQQARGTPTARSSVGSVTTLSNLLRMLYSRAGD. YPPGQGI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SS

TT





BTSSSB.

TT


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   94.....100.........110.........120......... 130......
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  HTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPK
Query Conservation             
            
                
     
       
  
                     
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
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   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  AEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQML
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Template Conservation  .....................     

 
   
 
  
 
 
                
   
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . VYAEGFSPNTPEGACPECHGLGRVYTVTEDSMVPDPSLTIRERAVAAWPQA. . WGGQNQ
Template Known Secondary structure  .....................

GGGG
TTSTTTB
TTTTTSS


S
TTSBTTTTSSTTS
SS..
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   137..140.........150.........160.........170.........180....... ..190...
 
   322.......330.........340.........350.........360........ .370.........380.........390..
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Query Sequence  KSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTS. . . . . . . . . IRRHPFEGVLHNMERRYKETESSA
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Template Conservation               
   
       

 
                              
                 
  
Template Sequence  RDILVTLGIDVDVPWRELPEETRHWILFTDEQPVVPVYPGLTPAETQRALKKKMEPSYMGTFSSARRHVLHTFANTESAS
Template Known Secondary structure  T

TTSBGGGS






TT

TT


S





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   194.....200.........210.........220.........230.........240.........250.........260.........270...
 
   393......400.........410.........420.........430.........440...... ...450.........460
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Query Sequence  VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNL. . . . . . . . . . . . KLAGQRAKIAEKIL
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Template Conservation      
        
  
 
 

 
 
  
 
 
  
                                            
Template Sequence  MKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQRMA
Template Known Secondary structure  TT

TTTTTS
B
T
BBTTB
TTSBT
STT

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   274.....280.........290.........300.........310.........320.........330.........340.........350...
 
   461........470.........480.........490.........500.........510.........520.........530.........540
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Query Sequence  KEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT
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Template Conservation        
  
   

      
    




 

  

  
       
 





  

      
   
  
   
 
Template Sequence  ADLVKRLDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS
Template Known Secondary structure  TT
TTSBSS
BGGGS
TTS


S

TTTT

TTSTTT
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   354.....360.........370.........380.........390.........400.........410.........420.........430...
 
   541........550.........560.........570.........580.........590.........600.........610.........620
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Query Sequence  VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARG
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Template Sequence  LFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHT. . . EPHTPREPAGWLELNGVTR
Template Known Secondary structure 



S
SSSGGG

S
GGGGGS
TT
T



...







S
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   434.....440.........450.........460.........470.........480.........490. ........500.........510
 
   621........630.........640.........650.........660.........670.........680.........690.........700
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Query Sequence  NNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSN
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Template Sequence  NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQGSARLGGD. . . . . . LAQITRLVRVDQKPIGRTPRSN
Template Known Secondary structure  TTSSSTTSSTTS



SS......GGG


SS
S
SSTT

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   511........520.........530.........540.........550.........560.. .......570.........580....
 
   701........710.........720.........730.........740.........750.........760.........770.........780
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Query Sequence  PATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
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Template Conservation    
     
 

 

     
   
      
 
   
      
 
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Template Sequence  MATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG. . . . . WVMVPSVYAPCPVCHGTRYNAETLEVEY
Template Known Secondary structure  TTTTSSTS


TTSS
SSSSSSB
SSSTT

.....




TTTSSS
B
TTGGG

S
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   602.......610.........620.........630.........640........ .650.........660.........670......
 
   781........790.........800.........810.........820.........830.........840.........850.........860
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Query Sequence  KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPT
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Template Sequence  RGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT
Template Known Secondary structure  SS

T
BTTT
T
TTSBTT

GGG

SSSSS

S
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   682.......690.........700.........710.........720.........730.........740.........750.........760.
 
   861........870.........880.........890.........900.........910.........920.........930.........940
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Query Sequence  TGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML
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Template Sequence  TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRAAL
Template Known Secondary structure  SS

TT



TT
S
SSSGGG

SST
SS
SST
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   762.......770.........780.........790.........800.........810.........820.........830.........840.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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