Job Description P0A698 Confidence 100.00% Date Thu Jan 5 11:02:38 GMT 2012 Rank 36 Aligned Residues 219 % Identity 27% Template c2d62A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein Resolution 2.10 Å

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		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.					.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		L	K	L	T	G	A	R	G	N	N	L	K	D	V	T	L	T	L	P	V	G	L	F	T	C	I	T	G	V	S	G	S	G	K	S	T	L	I	N	D	T	L	F	P	I	A	Q	R	Q	L	N	G	A	T	I	A	E	P	A	P	Y	R	D	I	Q	G	L	E	H	.	.	.	.	F	D	K	V	I	D	I
Query Conservation																																																																							.	.	.	.
Alig confidence																																									.	.																													.	.	.	.
Template Conservation																																									.	.
Template Sequence		I	W	K	R	F	G	D	V	T	A	V	K	D	L	S	L	E	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	.	.	X	I	A	G	L	E	E	P	T	R	G	Q	I	Y	I	E	D	N	L	V	A	D	P	E	K	G	V	F	V	P	P	K	E	R	D	V	A	X	V
Template Known Secondary structure							T	T													T	T								S	T	T	S	S							.	.				T	S	S			S							T	T						G	G	G	T									T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	S	P	I	G	R	T	P	R	S	N	P	A	T	Y	T	G	V	F	T	P	V	R	E	L	F	A	G	V	P	E	S	R	A	R	G	Y	T	P	G	R	F	S	F	N	V	R	G	G	R	C	E	A	C	Q	G	D	G	V	I	K	V	E	M	H	F	L	P	D	I	Y	V	P	C	D	Q	C	K	G
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	S	Y	A	L	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.
		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.							800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		K	R	Y	N	R	E	T	L	E	I	K	Y	K	G	K	T	I	H	E	V	L	D	M	T	I	E	E	A	R	E	F	.	.	.	.	.	.	F	D	A	V	P	A	L	A	R	K	L	Q	T	L	M	D	V	G	L	T	Y	I	R	L	G	Q	S	A	T	T	L	S	G	G	E	A	Q	R	V	K	L	A	R
Query Conservation																																	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.																					.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	X	T	V	Y	D	N	I	A	F	P	L	K	L	R	K	V	P	K	Q	E	I	D	K	R	V	R	E	V	A	E	X	L	G	L	T	.	E	L	L	N	R	K	P	R	E	L	S	G	G	Q	R	Q	R	V	A	L	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S												T	T	T																	T	T		G	.	G	G	T	T			G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template SS confidence
																							98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		843	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.		.	.	.	.	.	.	.	.	890	.	.	.	.	.		.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920
Predicted Secondary structure																																									.															.
Query SS confidence																																									.															.
Query Sequence		E	L	S	K	R	G	T	G	Q	T	L	Y	I	L	D	E	P	T	T	G	L	H	F	A	D	I	Q	Q	L	L	D	V	L	H	K	L	R	D	Q	.	G	N	T	I	V	V	I	E	H	N	L	D	V	I	.	K	T	A	D	W	I	V	D	L	G	P	E	G	G	S	G	G	G	E	I	L	V	S	G	T
Query Conservation																																									.															.
Alig confidence									.	.	.																														.															.										.	.	.	.	.	.
Template Conservation									.	.	.																																																							.	.	.	.	.	.
Template Sequence		A	I	I	R	R	P	K	.	.	.	V	F	L	X	D	E	P	L	S	N	L	D	A	K	L	R	V	K	X	R	A	E	L	K	K	L	Q	R	Q	L	G	V	T	T	I	Y	V	T	H	D	Q	V	E	A	X	T	X	G	D	R	I	A	V	X	.	.	.	.	.	.	N	K	G	E	L	Q	Q	V	G	T
Template Known Secondary structure				S	S			S	.	.	.						S	T	T	T	T																					T								S										S						.	.	.	.	.	.		T	T
Template Predicted Secondary structure									.	.	.																																																							.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.							.	.	.	220	.	.	.	.	.	.
		921	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	T	V	A	E	C	E	A	S	H	T	A	R	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	E	V	Y	Y	K	P	V	N	T	F	V	A	G	F
Template Known Secondary structure								S		S	B
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions