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Job DescriptionP0A698
Confidence100.00%DateThu Jan 5 11:02:38 GMT 2012
Rank36Aligned Residues219
% Identity27%Templatec2d62A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   613......620.........630.........640.........650.........660.........670.........680. .......
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Query Sequence  LKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEH. . . . FDKVIDI
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Template Sequence  IWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLR. . XIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV
Template Known Secondary structure  TT
TT

STTSS..TSS

STTGGGT

T
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   12.......20.........30.........40.........50 .........60.........70.........80.........
 
   689690.........700.........710.........720.........730.........740.........750.........760........
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Query Sequence  DQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKG
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Template Sequence  FQSYALYP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

S



T........................................................................
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   90.......
 
   769770.........780.........790......... 800.........810.........820.........830.........840..
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Query Sequence  KRYNRETLEIKYKGKTIHEVLDMTIEEAREF. . . . . . FDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLAR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . HXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLT. ELLNRKPRELSGGQRQRVALGR
Template Known Secondary structure  .....................TS
TTT

TT
G.GGTT

GGGS
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   98.100.........110.........120.........130... ......140.........150.....
 
   843......850.........860.........870.........880. ........890..... ....900.........910.........920
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Query Sequence  ELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQ. GNTIVVIEHNLDVI. KTADWIVDLGPEGGSGGGEILVSGT
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Template Sequence  AIIRRPK. . . VFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVX. . . . . . NKGELQQVGT
Template Known Secondary structure  SS

S...STTTT

T
S

S......TT
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   156...160.. .......170.........180.........190.........200.........210...... ...220......
 
   921........930......
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Query Sequence  PETVAECEASHTARFL
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Template Sequence  PDEVYYKPVNTFVAGF
Template Known Secondary structure  S
SB
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   227..230.........240..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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