Job Description P45468 Confidence 13.73% Date Thu Jan 5 12:02:44 GMT 2012 Rank 3 Aligned Residues 242 % Identity 16% Template c3k3gA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		D	A	N	P	W	Q	A	A	L	D	Y	A	M	I	Y	F	L	A	V	W	K	A	A	.	.	V	L	G	V	I	L	G	S	L	I	Q	V	L	I	P	R	D	W	L	L	R	T	L	G	Q	S	R	F	R	G	T	L	L	G	T	L	F	S	L	P	G	M	M	C	T	C	C	A	A	P	V	A	A	G	M
Query Conservation																									.	.
Alig confidence																									.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	N	N	T	V	T	G	L	L	F	F	A	G	I	F	Y	N	S	T	T	L	G	V	C	A	V	L	G	T	A	A	S	T	L	T	A	Q	L	L	G	V	D	K	P	L	V	R	A	G	L	F	G	F	N	G	T	L	A	G	I	A	L	P	F	F	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																									T								T	T	T	T	T														B		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		R	R	Q	Q	V	S	M	G	G	A	L	A	F	W	M	G	N	P	V	L	N	P	A	T	L	V	F	M	G	F	V	L	G	W	G	.	.	.	F	A	A	I	R	L	V	A	G	L	V	M	V	L	L	I	A	T	L	V	Q	K	W	V	R	E	T	P	Q	T	Q	A	P	V	E	I	D	I	P	E	A	Q
Query Conservation																																					.	.	.
Alig confidence		.	.	.	.																																.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	Y	E	P	A	M	L	G	Y	V	A	L	N	G	A	F	T	T	I	I	M	A	S	L	L	N	F	L	G	K	W	G	V	P	A	L	T	A	P	F	V	L	A	T	W	L	L	M	F	G	V	Y	K	L	S	L	F	H	P	G	A	L	I	A	P	A	L	P	S	V	D	M	G	T	V	T	G
Template Known Secondary structure		.	.	.	.			T	T																								G	G	G	T				T	T												G	G	G	G	T		T	T	S		B		T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.																				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		G	G	F	F	S	R	W	G	R	A	L	W	T	L	F	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	I	P	V	Y	I	L	A	V	L	V	L	G	A	A	R	V	W	L	.	.	F	P	H	A	D	G	A	V	D	N	S	L	M	W	V	V	A	M	A	V	A	G	C
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		R	T	F	M	E	G	L	F	K	G	V	G	E	V	M	F	Q	D	N	I	V	T	G	V	I	F	V	V	A	I	L	V	N	S	R	I	S	A	L	F	A	V	I	G	S	L	V	G	L	C	T	A	L	I	M	H	S	P	E	T	P	V	R	L	G	L	Y	G	F	N	S	V	L	C	G	I	A	M	G	G
Template Known Secondary structure														G	G	G	T																																							T	T								T	T	T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		L	F	V	I	P	T	A	A	E	I	P	I	V	Q	T	M	M	L	A	G	M	G	T	A	P	A	L	A	L	L	M	.	.	.	T	L	P	A	V	S	L	P	S	L	I	M	L	R
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence		I	F	F	Y	L	N	I	R	T	F	L	Y	A	L	G	C	M	V	L	G	A	I	A	T	G	A	F	S	V	L	L	S	P	I	G	M	P	A	L	T	W	P	F	I	V	V	T	W
Template Known Secondary structure		T	S	B			S																									T	G	G	G	T				T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions