Job Description P45468 Confidence 1.98% Date Thu Jan 5 12:02:44 GMT 2012 Rank 95 Aligned Residues 299 % Identity 9% Template c2xq2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Resolution 2.73 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	A	L	F	F	L	V	V	I	A	G	L	W	Y	V	K	W	E	P	Y	Y	G	K	A	F	T	A	A	E	T	H	S	I	G	K	S	I	L	A	Q	A	D	A	N	P	W	Q	A	A	L	D	Y	A	M	I	Y	F	L	A	V	W	K	A	A	V	L	G	V	I	L	G	S	L	I	Q	V	L	I	P
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.
Template Sequence		V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	.	.	.	.	.	.	.	.	.	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N
Template Known Secondary structure																		G	G	G														G	G	G	S		S	S			S	S	S	G	G	G	G	T	S		T	.	.	.	.	.	.	.	.	.	T					S	T										T	T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.										.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		R	D	W	L	L	R	T	L	G	Q	S	R	F	R	G	T	L	L	G	T	L	F	S	L	P	G	M	M	C	T	C	C	A	A	P	V	A	A	G	M	R	R	Q	Q	V	S	M	G	G	A	L	A	F	W	M	G	N	P	V	L	N	P	A	T	L	V	F	M	G	F	V	L	G	.	W	G	F	A	A	I
Query Conservation																																																																											.
Alig confidence																																																																											.
Template Conservation
Template Sequence		Q	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	A	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G
Template Known Secondary structure			S							T	T	S																T	T	T						T											T														S	T	B	G	G	G								T	S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	A	G	L	V	M	V	L	L	I	A	T	L	V	Q	K	W	V	R	E	T	P	Q	T	Q	A	P	V	E	I	D	I	P	E	A	Q	G	G	F	F	S	R	W	G	R	A	L	W	T	L	F	W	S	T	I	P	V	Y	I	L	A	V	L	V	L	G	A	A	R	V	W	L	F	P	H	A	D	G
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	.	.	.	.	.	.	.	.	.	.	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	A	L	I	A	P	M	L	G	.	.	.	.
Template Known Secondary structure																														T					T		S						.	.	.	.	.	.	.	.	.	.																					G	G	G	G	G	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.											.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	N	S	L	M	W	V	V	A	M	A	V	A	G	C	L	F	V	I	P	T	A	A	E	I	P	I	V	Q	T	M	M	L	A	G	M	G	T	A	P	A	L	A	L	L	M	T	L	P	A	V	S	L	P	S	L	I	M	L	R	K	A	F	P	A	K	A	L	W	L	T	G	A	M	V	A	V	S
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	I	G	Q	C	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V
Template Known Secondary structure		.	.	.	.	.	G		B											T	T	T															T	T																							S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		336	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	I	V	G	G	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	F	T	S	L	S	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions