Job Description P45468 Confidence 3.72% Date Thu Jan 5 12:02:44 GMT 2012 Rank 34 Aligned Residues 246 % Identity 11% Template c1ldaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycerol uptake facilitator protein; PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol Resolution 2.80 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	K	A	A	V	L	G	V	I	L	G	S	L	I	Q	V	L	I	P	R	D	W	L	L	R	T	L	G	Q	S	R	F	R	G	T	L	L	G	T	L	F	S	L	P	G	M	M	C	T	C	C	A	A	P	V	A	A	G	M	R	R	Q	Q	V	S	M	G	G	A	L	A	F	W	M	G	N	P	V	L
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	G	Q	C	I	A	E	F	L	G	T	G	L	L	I	F	F	G	V	G	C	V	A	A	L	K	V	A	G	A	S	F	G	Q	W	E	I	S	V	I	W	G	L	G	V	A	M	A	I	Y	L	T	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	A	H	L
Template Known Secondary structure																														S																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																				.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		N	P	A	T	L	V	F	M	G	F	V	L	G	.	.	W	G	F	A	A	I	R	L	V	A	G	L	V	M	V	L	L	I	A	T	L	V	Q	K	W	V	R	E	T	P	Q	T	Q	A	P	V	E	I	D	I	P	E	A	Q	G	G	F	F	S	R	W	G	R	A	L	W	T	L	F	W	S	T	I	P	V
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		N	P	A	V	T	I	A	L	W	L	F	A	C	F	D	K	R	K	V	I	P	F	I	V	S	Q	V	A	G	A	F	C	A	A	A	L	V	Y	G	L	Y	Y	N	L	F	F	D	F	E	Q	T	H	H	I	V	R	G	S	V	E	S	V	D	L	A	G	T	F	S	T	Y	P	N	P	H	I	N	F	V	Q
Template Known Secondary structure													S				G	G	G																							T											T	T			T	T	S	G	G	G					T	T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	L	A	V	L	V	L	G	A	A	R	V	W	L	F	P	H	A	D	G	A	V	D	N	S	L	M	W	V	V	A	M	A	V	A	G	C	L	F	V	I	P	T	A	A	E	I	P	I	V	Q	T	M	M	L	A	G	M	G	T	A	P	A	L	A	L	L	M	T	L	P	A	V	S	L	P	S	L	I
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		A	F	A	V	E	M	V	I	T	A	I	L	M	G	L	I	L	A	L	T	D	D	G	N	G	V	P	R	G	P	L	A	P	L	L	I	G	L	L	I	A	V	I	G	A	S	M	G	P	L	T	G	F	A	M	N	P	A	R	D	F	G	P	K	V	F	A	W	L	A	G	W	G	N	V	A	.	.	.	.
Template Known Secondary structure																							T	T	S	S	S			G	G	G																T																							T	T	T	T	T			.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	R	K	A	F	P	A	K	A	L	W	L	T	G	A	M	V	A	V	S	G	V	I	V	G	G	L	A	L	L	F
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	F	T	G	G	R	D	I	P	Y	F	L	V	P	L	F	G	P	I	V	G	A	I	V	G	A	F	A	Y	R	K	L
Template Known Secondary structure		.				S	S	S	S		T	T
Template Predicted Secondary structure		.
Template SS confidence
			224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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