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Job DescriptionP05707
Confidence98.86%DateThu Jan 5 10:58:50 GMT 2012
Rank230Aligned Residues201
% Identity12%Templatec3h2sA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:putative nadh-flavin reductase; PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19.
Resolution1.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  AVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDL
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Template Sequence  IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LGATVATLV
Template Known Secondary structure  TTTSTT
S
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   3......10.........20.........30.........40 .........
 
   85....90.........100.........110.........120.........130.........140.... .....150.....
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Query Sequence  LVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSG. . . . . . . . . KVGSKHNSGYS
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Template Sequence  KEPLVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAXPGADHPXILDFPESAASQ
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GGG

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GGGSB
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GGGG

GGGGGS
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   50.........60.........70.........80.........90.........100.........110.........120.........
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  AAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCDYQDVLNMLL
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Template Sequence  PWYDGALYQYYEYQFLQXNANVNWIGISPSEAFPSGPATSYVAGKDTLLVGEDG. . . . . . . . . . . . QSHITTGNXALAIL
Template Known Secondary structure  TTTT
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   130.........140.........150.........160.........170.........180... ......190.......
 
   236...240.........250..
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Query Sequence  FYASPKASYCTGQSINV
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Template Sequence  DQL. . EHPTAIRDRIVV
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   198.200 .........210..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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