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Job DescriptionP05707
Confidence100.00%DateThu Jan 5 10:58:50 GMT 2012
Rank107Aligned Residues238
% Identity21%Templatec2ekqB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:2-deoxy-d-gluconate 3-dehydrogenase; PDBTitle: structure of tt0495 protein from thermus thermophilus
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  NQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGR
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Template Sequence  ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAV. . . . . . . . . . PLPTDLEKDDPKGLVKRALEALGGL
Template Known Secondary structure 

TTTSTT
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T
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TTTS
TS
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   2.......10.........20.........30.........40...... ...50.........60.........70.
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  VDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGG
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Template Sequence  HVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTAL
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TTT

TT


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   72.......80.........90.........100.........110.........120.........130.........140.........150.
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  VGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCDYQDVLNMLLFYASPK
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Template Sequence  LGLTRALAKEWARLGIRVNLLCPG. YVETEFTLPLRQ. . . . . . . . . NPELYEPITARIPMGRWARPEEIARVAAVLCGDE
Template Known Secondary structure  GGGT
.SB
SGGGT.........
TT
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B
TSGG
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   152.......160.........170..... ....180....... ..190.........200.........210.........220.
 
   242.......250.........
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Query Sequence  ASYCTGQSINVTGGQVMF
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Template Sequence  AEYLTGQAVAVDGGFLAY
Template Known Secondary structure  GTT

S
STTTTT
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   222.......230.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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