Job Description P21345 Confidence 4.58% Date Thu Jan 5 11:38:04 GMT 2012 Rank 36 Aligned Residues 52 % Identity 17% Template d1m9dc_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.90

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		373	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		G	I	P	L	E	G	L	A	F	I	.	.	A	G	V	D	R	I	L	D	M	A	R	T	A	L	N	V	V	G	N	A	L	A	V	L	V	I	A	K	W	E	H	K	F	D	R	K	K	A	L	A	Y	E	R	E
Query Conservation												.	.
Alig confidence												.	.																													.	.
Template Conservation																																										.	.
Template Sequence		A	F	S	P	E	V	I	P	M	F	S	A	L	S	E	G	A	T	P	Q	D	L	N	T	M	L	N	T	V	G	G	H	Q	A	A	M	Q	M	L	K	.	.	E	T	I	N	E	E	A	A	E	W	D	R	T	H
Template Known Secondary structure		T	T		T	T									T	T	T												T	S		S										.	.														S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions