Job Description P30860 Confidence 97.86% Date Thu Jan 5 11:46:37 GMT 2012 Rank 43 Aligned Residues 177 % Identity 19% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																			.	.	.	.																															.	.	.	.	.
Query SS confidence																			.	.	.	.																															.	.	.	.	.
Query Sequence		A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	.	.	.	.	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q	.	.	.	.	.	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T	F
Query Conservation																			.	.	.	.																															.	.	.	.	.
Alig confidence																			.	.	.	.																															.	.	.	.	.
Template Conservation
Template Sequence		F	P	E	E	L	R	K	Q	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N	E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L	N	A	S	K	P	T	V	Q	L	V	A	P	W	G	T	T	S	N	S	Y	L	V	V	P	K	N	S	T	A	K	S	I
Template Known Secondary structure									T	T										T	T												T	T									S										S																					T	T					S	G
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	.	.	.	.	.	.	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																				.	.
Template Conservation																																																																		.	.
Template Sequence		K	D	L	K	G	K	K	I	A	L	H	R	G	R	P	W	E	L	A	F	S	N	L	L	Q	S	E	G	L	T	F	K	D	F	K	I	V	N	V	N	P	Q	V	G	A	A	A	L	A	S	G	T	V	D	G	F	F	S	L	F	D	S	Y	I	.	.	L	E	D	R	G	V	G	K	I	I	W	S	T	K
Template Known Secondary structure		G	G	G	T	T	S						T	T	S	T												T	T			G	G	G	S																	T	S	S	S					S	T	T				.	.				T	T	S							G	G
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.
Template Conservation
Template Sequence		T	A	P	V	D	W	K	L	X	G	G	V	W	A	R	N	D	F	V	K	Q	N	P	E	I	T	Q	A	I	V	T	A	Y	L	K	S	V	H
Template Known Secondary structure		G	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions