Job Description P30860 Confidence 97.38% Date Thu Jan 5 11:46:37 GMT 2012 Rank 55 Aligned Residues 189 % Identity 16% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.
Query Sequence		I	D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q	V	S	F	T	T	P	Y	Y	E	N	S	A	.	.	.	.	.	.	.	.	V	V	I	A	K	K	D	T	Y	K
Query Conservation																																																																.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	N	V	L	K	V	V	F	E	K	M	G	Y	N	A	E	I	F	S	V	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N	Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S
Template Known Secondary structure												T	T																			T	T	S	S	S								T	T	T	T								G	G	G																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Query Sequence		T	F	A	D	L	.	.	.	.	.	.	.	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	.	.	.	.	.	P	E	V	K	T	V	S	Y	D	S	Y	.	.	.	.	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K
Query Conservation							.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Alig confidence							.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y	E	L	V	P	S	S	E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y
Template Known Secondary structure		B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S																				T	T										S		T					S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.																										.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																															.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	N	K	A	L	L	E	K	L	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	A	I	K	A	D	G	T	Y	Q
Query Conservation																															.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.													.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation															.	.	.	.																																																												.	.	.
Template Sequence		D	I	K	F	L	D	D	P	D	L	I	M	G	.	.	.	.	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	Y	Y	V	F	D	H	F	Y	W	S	D	D	L	I	L	P	L	M	D	K	N	D	K	E	P	G	K	E	Y	R	N	A	V	E	F	V	E	K	N	.	.	.	K
Template Known Secondary structure							B		T	T		T	T		.	.	.	.	S	S									T	T																																S	T	T													T	.	.	.
Template Predicted Secondary structure															.	.	.	.																																																												.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.
		235	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	S	D	Q	W	F	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	V	K	T	W	V	P	E
Template Known Secondary structure						T	T	S		G
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions