Job Description P30860 Confidence 64.74% Date Thu Jan 5 11:46:37 GMT 2012 Rank 85 Aligned Residues 191 % Identity 12% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

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		46	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																										.	.	.	.	.	.
Predicted Secondary structure													.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	I	D	L	A	K	A	L	C	K	.	Q	M	Q	A	E	C	T	F	T	N	H	.	.	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	R	S	K	Q
Query Conservation													.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	A	S	M	L	G	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	L	G	S	N	A	V	Q	Q	Q	A	L	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P	E	K	D	P	D	K	A	L	A	L	T	Q	R	E	F	K	K	R	Y	D	L
Template Known Secondary structure															S	S											S										T	T	S		S														T	T							S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.											130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																						.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	.	.	.	.	.	Y	K	T	F	A	D	L	K	G	K	R	I	.	.	.	.	.	.	.	.	.	.	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D
Query Conservation																						.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	W	Y	D	S	Y	G	F	D	N	T	Y	A	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N	Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T	Y	G	M	T	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D	A
Template Known Secondary structure								S		B																T			B	S	G	G	G	G	G	G	G	G	G							T	T	G	G	G		S	S	S	S													S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.													.	.	.	.
Predicted Secondary structure																																																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	N	K	A	L	L	E	K	L	N	N	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	A
Query Conservation																																																				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.																										.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		V	K	S	G	K	M	D	I	V	L	A	Y	S	T	D	G	R	I	K	S	.	.	.	.	.	Y	G	L	K	M	L	K	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P	E	K	V	L	K	E	H	P	E	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L	N	Y	E
Template Known Secondary structure					T	S		S						T	T							.	.	.	.	.	T	T					B		T	T			S				B													S	T	T							T	T	T	T
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		227	.	.	230	.		.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		I	K	A	D	G	.	T	Y	Q	K	I	S	D	Q	W	F
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		V	D	G	N	L	K	E	P	S	V	V	A	K	E	Y	L
Template Known Secondary structure				T	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions