Job Description P30860 Confidence 99.97% Date Thu Jan 5 11:46:37 GMT 2012 Rank 21 Aligned Residues 219 % Identity 16% Template c3mplA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) Resolution 2.10 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	A	A	E	K	I	N	F	G	V	S	A	T	Y	P	P	F	E	S	I	G	A	N	N	E	I	V	G	F	D	I	D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		M	A	D	H	P	V	V	K	V	A	V	L	N	L	F	A	P	F	T	L	F	R	.	.	E	Q	F	G	G	I	S	A	A	V	L	Q	L	L	Q	L	R	T	G	L	D	F	E	I	I	G	V	D	T	V	E	E	L	I	A	K	L	R	S	G	E	A	D	M	A	G	A	L	E	V	N	S	A	R	E	S
Template Known Secondary structure						S								T			T	T	T					.	.					S																							S												T	S	S	S									G	G	G	T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		Q	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	.	.	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		F	L	S	F	S	R	P	Y	V	R	N	G	M	V	I	V	T	R	Q	D	P	D	A	P	V	D	A	D	H	L	D	G	R	T	V	A	L	V	R	N	S	A	A	I	P	L	L	Q	R	R	Y	P	Q	A	K	V	V	T	A	D	N	P	S	E	A	M	L	M	V	A	N	G	Q	A	D	A	V	V	E	T
Template Known Secondary structure		T																				S	S			T	T	T	T			T	T	S						T	T		T								S	S	T	T							S	S											T	S		S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A	D	G	T	Y	Q	K	I	S	D	Q	W
Query Conservation
Alig confidence																	.	.																																					.
Template Conservation																	.	.																																					.
Template Sequence		Q	I	S	A	S	Y	Y	V	N	R	Y	F	A	G	K	.	.	L	R	I	A	S	A	L	D	L	P	P	A	E	I	A	L	A	T	T	R	G	Q	T	E	L	M	S	I	L	N	K	A	L	Y	S	I	.	S	N	D	E	L	A	S	I	I	S	R	W
Template Known Secondary structure														T	T	T	.	.									S											T	T														T	S	.											T	T
Template Predicted Secondary structure																	.	.																																					.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions