Job Description P30860 Confidence 97.59% Date Thu Jan 5 11:46:37 GMT 2012 Rank 51 Aligned Residues 189 % Identity 12% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	.	.	.	.	.	.	.	.	E	R	S	K	Q	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	L	T	Q	A	M	K	E	H	G	F	D	V	K	T	T	A	L	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	K	Y	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S
Template Known Secondary structure											T	T																			T	T	S	S	S								T	T	T	T								G	G	G																			T	T	S				B
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.											.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.									.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.									.	.	.
Query Sequence		F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	P	E	V	.	.	.	.	.	.	.	.	.	.	K	T	V	S	Y	D	S	Y	.	.	.	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q
Query Conservation																														.	.	.	.	.	.	.	.	.	.									.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation
Template Sequence		I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P	S	S	S	G	A	M	T	V	A	L	G	E	A	I	K	Q	H	K	D	I	V	I	T	G	W	S	P	H	W	M	F	N	K	Y	D	L	K	Y
Template Known Secondary structure		G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T																					T	T										S		T					S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220											.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																											.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	N	K	A	L	L	E	K	L	.	.	.	.	.	.	.	.	.	.	N	N	A	L	A	A	I	K	A	D	G	T	Y	Q	K	I	S	D	Q	W	F
Query Conservation																											.	.	.	.									.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.													.	.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		L	A	D	P	K	G	T	M	G	.	.	.	.	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A	Y	K	V	L	D	K	F	N	W	T	T	K	D	M	E	A	V	M	L	D	I	Q	N	G	K	T	P	E	E	A	A	K	N	W	I
Template Known Secondary structure			B		T	T		T	T		.	.	.	.											T	T																															T	T
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.					.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions