Job Description P30860 Confidence 98.26% Date Thu Jan 5 11:46:37 GMT 2012 Rank 39 Aligned Residues 217 % Identity 9% Template c3ix1A_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	A	E	K	I	N	F	G	V	S	A	T	Y	P	P	F	E	S	I	G	A	N	N	E	I	V	G	F	D	I	D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	.	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q
Query Conservation																																																			.
Alig confidence											.	.					.	.	.	.	.	.																													.
Template Conservation											.	.					.	.	.	.	.	.
Template Sequence		A	L	E	T	V	E	V	M	L	.	.	D	W	Y	P	.	.	.	.	.	.	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K
Template Known Secondary structure											.	.	S	S	S		.	.	.	.	.	.		G	G	G									T	T					T	T									S	S	T	T									T	S		S															T
Template Predicted Secondary structure											.	.					.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.			.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
							98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																													.	.	.	.	.
Query SS confidence		.	.	.	.	.																																													.	.	.	.	.
Query Sequence		.	.	.	.	.	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	.	.	.	.	.	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R
Query Conservation		.	.	.	.	.																																													.	.	.	.	.
Alig confidence		.	.	.	.	.																																													.	.	.	.	.
Template Conservation
Template Sequence		D	L	P	V	V	S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	E	L	G	A	S	I	V	S	G	R
Template Known Secondary structure		T												S									G	G	G			S	S	G	G	G	G	T	T	S						S		T	T												T	T			G	G	G							T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.										.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.																		.
Query SS confidence																																																.	.	.	.	.	.	.	.	.																		.
Query Sequence		I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	N	.	.	.	.	.	.	.	.	.	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A	D	.	G	T	Y	Q	K	I	S
Query Conservation																																																.	.	.	.	.	.	.	.	.																		.
Alig confidence																																																.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K	G	Y	E	W	M	V	E	N	P	D	E	A	L	N	V	L
Template Known Secondary structure		S	S							T	T	T								T	T								G	G	G	T	T						S																																		S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		238	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	W	F	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	N	Q	D	E
Template Known Secondary structure				T	S		T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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