Job Description P30860 Confidence 100.00% Date Thu Jan 5 11:46:37 GMT 2012 Rank 5 Aligned Residues 224 % Identity 30% Template c3hv1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus Resolution 1.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	A	E	K	I	N	F	G	V	S	A	T	Y	P	P	F	E	S	I	G	A	N	N	E	I	V	G	F	D	I	D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	E	K	K	I	K	I	G	F	D	A	T	F	V	P	X	G	Y	E	E	K	D	G	S	Y	I	G	F	D	I	D	L	A	N	A	V	F	K	L	Y	G	I	D	V	E	W	Q	A	I	D	W	D	X	K	E	T	E	L	K	N	G	T	I	D	L	I	W	N	G	Y	S	V	T	D	E	R	K	Q	S
Template Known Secondary structure					T								T			T	T	T					T	T	S																T	T	T										G	G	G								T	S		S				S	S		B							T	T
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		98	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																																						.	.	.	.	.	.	.
Query SS confidence									.																																						.	.	.	.	.	.	.
Query Sequence		V	S	F	T	T	P	Y	.	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	.	.	.	.	.	.	.	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R	I	D
Query Conservation									.																																						.	.	.	.	.	.	.
Alig confidence									.																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	F	T	E	P	Y	X	V	N	E	Q	V	L	V	T	K	K	S	S	G	I	D	S	V	A	G	X	A	G	K	T	L	G	A	Q	A	G	S	S	G	Y	D	A	F	N	A	S	P	K	I	L	K	D	V	V	A	N	Q	K	V	V	Q	Y	S	T	F	T	Q	A	L	I	D	L	N	S	G	R	I	D
Template Known Secondary structure																			G	G	G				S	S	G	G	G	T	T							T	T											T	T	T	T	T	T	T	S	G	G	G						S	S											T	S		S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A	D	G	T	Y	Q	K	I	S	D	Q	W	F	P	Q
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		G	L	L	I	D	R	V	Y	A	N	Y	Y	L	E	K	S	G	V	L	D	.	.	Q	Y	N	V	X	P	A	G	Y	E	G	E	S	F	A	V	G	A	R	K	V	D	K	T	L	I	K	K	I	N	Q	G	F	E	T	L	Y	K	N	G	E	F	Q	K	I	S	N	K	W	F	G	E
Template Known Secondary structure																	T	T		G	G	.	.	G							S	S											T	T																			T											S	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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