Job Description P30860 Confidence 97.43% Date Thu Jan 5 11:46:37 GMT 2012 Rank 53 Aligned Residues 181 % Identity 9% Template c3hn0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Resolution 1.75 Å

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		59	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	A	E	C	T	F	T	N	H	A	.	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H
Query Conservation												.
Alig confidence												.																													.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		N	K	K	V	Q	V	K	V	V	D	S	P	D	L	A	Q	A	L	L	I	K	Q	E	T	D	I	A	V	L	P	X	I	N	A	A	N	L	Y	N	.	.	.	.	K	G	I	K	I	K	L	A	G	C	P	I	W	G	T	L	Y	L	V	E	K	T	P	L	K	E	P	A	L	Y	V	F	G	N	G	T	T
Template Known Secondary structure		T									S											T	T			S															.	.	.	.	T	T		S																		S	S			S						S	S	T	T	S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		138	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																																		.	.
Query SS confidence									.	.	.	.	.	.																																																																		.	.
Query Sequence		Q	K	Y	I	Q	D	Q	.	.	.	.	.	.	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	.	.
Query Conservation									.	.	.	.	.	.																																																																		.	.
Alig confidence									.	.	.	.	.	.																																																																		.	.
Template Conservation
Template Sequence		P	D	I	L	T	R	Y	Y	L	G	R	Q	R	L	D	Y	P	L	N	Y	A	F	N	T	A	G	E	I	T	Q	G	I	L	A	G	K	V	N	R	A	V	L	G	E	P	F	L	S	I	A	L	R	K	D	S	S	L	R	I	T	A	D	L	N	H	L	T	D	N	D	T	L	G	F	A	Q	T	A	V	V
Template Known Secondary structure														T								S			S											T	S		S						T	T										T	T										S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure		.	.	.	.	.																								.
Query SS confidence		.	.	.	.	.																								.
Query Sequence		.	.	.	.	.	R	P	D	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A	D	G	T	.	Y	Q	K	I	S	D	Q	W	F	P	Q
Query Conservation		.	.	.	.	.																								.
Alig confidence		.	.	.	.	.																								.
Template Conservation
Template Sequence		Y	T	P	T	X	E	K	Y	R	I	A	F	E	D	A	L	R	A	S	C	Q	K	A	V	R	Y	P	K	E	T	I	H	S	L	E	E	H	G	I	F
Template Known Secondary structure				G	G	G	G	G	G																													T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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