Job Description P30860 Confidence 88.39% Date Thu Jan 5 11:46:37 GMT 2012 Rank 66 Aligned Residues 173 % Identity 14% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	.	.	.	.	.	.	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q	V	S	F	T	T	P	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A	V	F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F
Template Known Secondary structure											T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G	G	G	G	S	T	T	T	S		S										S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
																						106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.												.
Template Conservation																																																													.	.												.
Template Sequence		G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	N	G	T	R	Q	T	T	S	N	R	A	I	N	S	I	A	D	M	K	G	L	K	L	R	V	P	N	A	A	T	N	L	A	Y	A	K	Y	V	.	.	G	A	S	P	T	P	M	A	F	S	E	.	V	Y	L	A	L	Q	T
Template Known Secondary structure																															S	S				S	G	G	G	G	T	T							S											T	.	.	T								G	G	G	.							T
Template Predicted Secondary structure																																																													.	.												.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	.	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A
Query Conservation																																																	.	.	.	.	.
Alig confidence																		.	.	.	.	.																											.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		N	A	V	D	G	Q	E	N	P	L	A	A	V	Q	A	Q	.	.	.	.	.	K	F	Y	E	V	Q	K	F	L	A	M	T	N	H	I	L	N	D	Q	L	Y	L	V	S	N	E	T	Y	K	E	L	P	E	D	L	Q	K	V	V	K	D	A	A	E	N	A	A	K
Template Known Secondary structure		T	S	S	S												T	.	.	.	.	.	T	G	G	G	S		S																						T	T	S
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions