Job Description P30860 Confidence 95.52% Date Thu Jan 5 11:46:37 GMT 2012 Rank 60 Aligned Residues 192 % Identity 19% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	K	I	N	F	G	V	S	A	T	Y	P	P	F	E	S	I	G	A	N	N	E	I	V	G	F	D	I	D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q	V
Query Conservation
Alig confidence										.						.	.	.	.	.	.		.	.	.	.
Template Conservation										.						.	.	.	.	.	.		.	.	.	.
Template Sequence		S	C	G	T	V	R	F	S	.	D	V	G	W	T	.	.	.	.	.	.	D	.	.	.	.	I	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P
Template Known Secondary structure				S						.			S		T	.	.	.	.	.	.	T	.	.	.	.															T	T														T	S	S	T	T	T	T											S	T	T
Template Predicted Secondary structure										.						.	.	.	.	.	.		.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.		40	.	.	.	.							.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.													.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	T	F	A	D	L	.	.	.	.	.	.	.	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	.	.	.	.	.	.	.	H	P	E	V	K	T	V	S
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E
Template Known Secondary structure					T	T																										T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		153	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure							.	.	.																																																								.	.	.	.
Query SS confidence							.	.	.																																																								.	.	.	.
Query Sequence		Y	D	S	Y	Q	.	.	.	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	N	K	A	L	L	E	K	L	N	N
Query Conservation							.	.	.																																																								.	.	.	.
Alig confidence							.	.	.																																		.																						.	.	.	.
Template Conservation																																											.
Template Sequence		S	S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	P	M	N	A	N	F	K	L	T	Y	L	S	G	.	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N
Template Known Secondary structure															T	T	T	T										S	S	G	G	G	G	T	S						B	S	.			S	S	S		S	T	T	T										T	T					S								T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions