Job Description P30860 Confidence 99.95% Date Thu Jan 5 11:46:37 GMT 2012 Rank 31 Aligned Residues 210 % Identity 19% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	Y	P	P	F	E	S	I	G	A	N	N	E	I	V	G	F	D	I	D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	.	.	.	.	.	.	.	.	.	.	.	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	R	S	K	Q
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	S	S	N	D	T	V	P	I	K	F	K	K	C	C	Y	G	Y	C	I	D	L	L	E	Q	L	A	E	D	M	N	F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	Q	V
Template Known Secondary structure		T	S	S	S					G	G	G						S														T									T	T								T	T												T	S		S				S	S		B							T	T
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	.	.	.	.	.	.	.	.	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	P	E	V	.	.	.	.	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N
Query Conservation																						.	.	.	.	.	.	.	.																																.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T	E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	T	P	D	G	V	Q	Y	L	K	N
Template Known Secondary structure		S				S		S											T	T	S					S	T	T						S			T	T						B	T	T	S																		G	G	G		B	S	S										S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		166	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		G	R	I	.	.	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A	D	G	T	Y	Q	K	I	S	D	Q	W	F	P
Query Conservation					.	.
Alig confidence					.	.																					.	.	.																								.
Template Conservation																											.	.	.																								.
Template Sequence		D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I	D	A	D	C	.	.	.	K	L	L	T	V	G	K	P	F	A	I	E	G	Y	G	I	G	L	P	P	N	S	P	.	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	H	G	F	M	D	V	L	H	D	K	W	Y	K
Template Known Secondary structure		S	S				S																	S	S		.	.	.						S														T	T		T	.	T														T	T										T	T
Template Predicted Secondary structure																											.	.	.																								.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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