Job Description P30860 Confidence 48.00% Date Thu Jan 5 11:46:37 GMT 2012 Rank 98 Aligned Residues 174 % Identity 11% Template c2hzkB_ PDB info PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Resolution 1.70 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	F	.	.	.	.	.	.	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	S	K	X	L	S	E	A	T	D	G	N	F	Q	I	Q	V	F	S	A	G	E	L	V	P	G	L	Q	A	A	D	A	V	T	E	G	T	V	E	C	C	H	T	V	G	Y	Y	Y	W	G	K	D	P	T	F	A	L	A	A	A	V	P	F	S	L	S	A	R	G	I	N	A	W	H	Y	H	G	G	G
Template Known Secondary structure										T	T	T	T									T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		T					T	T			T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
										94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	R	S	K	Q	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		I	D	L	Y	N	E	F	L	S	Q	H	N	I	V	A	F	P	G	G	N	T	G	V	Q	X	G	G	W	F	R	R	E	I	N	T	V	A	D	X	Q	G	L	K	X	R	V	.	.	.	.	.	G	G	F	A	G	K	V	X	E	R	L	G	V	V	P	Q	Q	I	A	G	G	D	I	Y	P	A	L	E	K
Template Known Secondary structure										G	G	G	T											S	B						S	S				S	S	G	G	G	T	T						.	.	.	.	.										T	T	T								G	G	G
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	.	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A
Query Conservation																																																	.	.	.	.	.
Alig confidence																										.	.																						.	.	.	.	.
Template Conservation																										.	.
Template Sequence		G	T	I	D	A	T	E	W	V	G	P	Y	D	D	E	K	L	G	F	F	K	V	A	P	.	.	Y	Y	Y	Y	P	G	W	W	E	G	G	P	T	V	H	F	X	F	N	K	S	A	Y	E	G	L	T	P	T	Y	Q	S	L	L	R	T	A	C	H	A	A	D	A
Template Known Secondary structure		T	S		S												T	T	T	G	G	G	T			.	.						B	T	T		S	S															S
Template Predicted Secondary structure																										.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions