Job Description P30860 Confidence 97.23% Date Thu Jan 5 11:46:37 GMT 2012 Rank 57 Aligned Residues 213 % Identity 11% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																																.											.	.	.	.	.
Query SS confidence																.	.																																.											.	.	.	.	.
Query Sequence		G	A	S	A	A	E	K	I	N	F	G	V	S	A	.	.	T	Y	P	P	F	E	S	I	G	A	N	N	E	I	V	G	F	D	I	D	L	A	K	A	L	C	K	Q	M	Q	A	.	E	C	T	F	T	N	H	A	F	D	.	.	.	.	.	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G
Query Conservation																.	.																																.											.	.	.	.	.
Alig confidence																.	.													.	.	.	.	.	.	.	.	.	.	.	.								.											.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L
Template Known Secondary structure					S		S								S	S	G	G	G									T	T	.	.	.	.	.	.	.	.	.	.	.	.					T	T		T	T							S													G	G	G	T	S		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.													.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		M	D	I	T	P	E	R	S	K	Q	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I	A	K	K	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	T	F	A	D	L	K	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	Y	I	Q	D	Q	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L
Template Known Secondary structure		T										T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
								145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																					.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																																					.	.	.	.
Query Sequence		.	.	.	.	.	.	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N	E	W	L	K	T	N	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	.	.	.	N	K
Query Conservation		.	.	.	.	.	.																																																																					.	.	.	.
Alig confidence		.	.	.	.	.	.																																														.	.																						.	.	.	.
Template Conservation																																																					.	.
Template Sequence		A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	.	.	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P
Template Known Secondary structure				T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T									T	S				.	.				G	G	G	T	B	T	T		B
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.												.	.
Query SS confidence															.	.	.	.	.	.	.	.												.	.
Query Sequence		A	L	L	E	K	L	N	N	A	L	A	A	I	.	.	.	.	.	.	.	.	K	A	D	G	T	Y	Q	K	I	S	D	.	.	Q	W	F	P	Q
Query Conservation															.	.	.	.	.	.	.	.												.	.
Alig confidence															.	.	.	.	.	.	.	.				.								.	.
Template Conservation																										.
Template Sequence		K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	.	E	M	C	Q	I	L	S	K	R	E	W	F	K	V
Template Known Secondary structure																					G	G	G			.								S	T	T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions