Job Description P30860 Confidence 87.04% Date Thu Jan 5 11:46:37 GMT 2012 Rank 68 Aligned Residues 190 % Identity 17% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	K	A	L	C	K	Q	M	Q	A	E	C	T	F	T	N	H	A	.	.	.	.	.	.	.	F	D	S	L	I	P	S	L	K	F	R	K	Y	D	A	V	I	S	G	M	D	I	T	P	.	.	.	.	.	.	.	.	.	.	E	R	S	K	Q	V	S	F	T	T	P	Y	Y	E	N	S	A	V	V	I
Query Conservation																					.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P	G	Y	E	P	Y	T	S	F	E	P	I	G	L	V	V	D	V	P	X	T	I	I	A
Template Known Secondary structure											S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S			S	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		A	K	K	D	T	Y	K	T	F	A	D	L	K	.	.	.	.	.	.	.	G	K	R	I	G	M	E	N	G	T	T	H	Q	K	.	.	.	.	.	.	Y	I	Q	D	Q	H	P	E	V	K	T	V	S	Y	D	S	Y	Q	N	A	F	I	D	L	K	N	G	R	I	D	G	V	F	G	D	T	A	V	V	N
Query Conservation															.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	D	F	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L	G	V	N	L	L	T	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T
Template Known Secondary structure			T	T		S			S												G	G	G						S		T	T	S														T									S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		180	.	.	.	.	.																	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		E	W	L	K	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	G	V	A	T	E	K	V	T	D	P	Q	Y	F	G	T	G	L	G	I	A	V	R	P	D	.	N	K	A	L	L	E	K	L	N	N	A	L	A	A	I	K	A	D	G	T	Y	Q	K	I	S	D	Q
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q
Template Known Secondary structure							T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions