Job Description P42628 Confidence 99.97% Date Thu Jan 5 12:01:58 GMT 2012 Rank 2 Aligned Residues 371 % Identity 14% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	I	K	F	D	S	T	D	T	G	W	V	I	M	S	I	G	M	A	I	G	A	G	I	V	F	L	P	V	Q	V	G	L	M	G	L	W	V	F	L	L	S	S	V	I	G	Y	P	A	M	Y	L	F	Q	R	L	F	I	N	T	L	A	E	S	P	E	C	K	D	Y	P	S	V	I	S	G	Y	L	G
Query Conservation
Alig confidence												.	.																										.
Template Conservation												.	.																										.
Template Sequence		D	A	H	K	V	G	L	I	P	V	.	.	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	.	I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G
Template Known Secondary structure				S	S							.	.							T	T	S	S	S	S	T	T	T					T	T	S	S			.			S																						T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure												.	.																										.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	W	G	I	L	L	G	A	L	Y	F	V	M	L	V	I	W	M	F	V	Y	S	T	A	I	T	N	D	S	A	S	Y	L	H	T	F	G	V	T	E	G	L	L	S	D	S	P	F	Y	G	L	V	L	I	C	I	L	V	A	I	S	S	R	G	E	K	L	L	F	K	I	S	T	G	M	V	L	T	K
Query Conservation
Alig confidence																																														.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		P	F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	.	.	.	.	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A
Template Known Secondary structure														T	T	T	T											T	G	G	G	S	S	S	S					S	S	S				.	.	.	.																S		S
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		L	L	V	V	A	A	L	G	V	S	M	V	G	M	W	H	L	Y	N	V	G	.	.	S	L	P	P	L	G	L	L	V	K	N	A	I	I	T	L	P	F	T	L	T	S	I	L	F	I	Q	T	L	S	P	M	V	I	S	Y	R	S	R	E	K	S	I	E	V	A	R	H	K	A	L	R	A	M	N	I	A
Query Conservation																							.	.
Alig confidence																							.	.																																										.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.
Template Sequence		L	I	P	I	V	G	I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	.	.	.	.	.	.	.	N	V	P	I	A	T	I	G	G
Template Known Secondary structure															S			S	S							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.								.	.	.	.	.	.	.	230	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	I	L	F	V	T	V	F	F	Y	A	V	S	F	T	L	A	M	G	H	D	E	A	V	K	A	Y	E	Q	N	I	S	A	L	A	I	A	A	Q	F	I	S	G	D	G	A	A	W	V	K	V	V	S	V	I	L	N	I	F	A	V	M	T	A	F	F	G	V	Y	L	G	F	R	E	A	T	Q	G	I
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	M	I	P	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A
Template Known Secondary structure													T	T				S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T																T	T	S	S	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																												.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.					390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.
Predicted Secondary structure																																													.	.	.	.																														.
Query SS confidence																																													.	.	.	.																														.
Query Sequence		V	M	N	I	L	R	R	K	M	P	A	E	K	I	N	E	N	L	V	Q	R	G	I	M	I	F	A	I	L	L	A	W	S	A	I	V	L	N	A	P	V	L	S	.	.	.	.	F	T	S	I	C	S	P	I	F	G	M	V	G	C	L	I	P	A	W	L	V	Y	K	V	P	A	L	H	K	.	Y	K	G
Query Conservation																																													.	.	.	.																														.
Alig confidence																																													.	.	.	.																														.
Template Conservation
Template Sequence		A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R
Template Known Secondary structure		T	T	S	S		S									S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	L	Y	L	I	I	V	T	G	L	L	L	C	V	S	P	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	Y	L	A	V	T	T	I	A	F	L	Y	C	I	W	A	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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