Job Description P42628 Confidence 99.98% Date Thu Jan 5 12:01:58 GMT 2012 Rank 1 Aligned Residues 390 % Identity 14% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	F	D	S	T	D	T	G	W	V	I	M	S	I	G	M	A	I	G	A	G	I	V	F	L	P	V	Q	V	G	L	M	G	L	W	V	F	L	L	S	S	V	I	G	Y	P	A	M	Y	L	F	Q	R	L	F	I	N	T	L	A	E	S	P	E	C	K	D	Y	P	S	V	I	S	G	Y	L	G	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N
Template Known Secondary structure						B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
			111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	W	G	I	L	L	G	A	L	Y	F	V	M	L	V	I	W	M	F	V	Y	S	T	A	I	T	N	D	S	A	S	Y	L	H	T	F	G	V	T	E	G	L	L	S	D	S	P	F	Y	G	L	V	L	I	C	I	L	V	A	I	S	S	R	G	E	K	L	L	F	K	I	S	T	G	M	V	L	T	K	L
Query Conservation		.
Alig confidence		.																																.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	.	.	.	.	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L
Template Known Secondary structure																																		.	.	.	.	T	T																										T
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	A	A	L	G	V	S	M	V	G	M	W	H	L	Y	N	V	G	S	L	P	P	L	G	L	L	V	K	N	A	I	I	T	L	P	F	T	L	T	S	I	L	F	I	Q	T	L	S	P	M	V	I	S	Y	R	S	R	E	K	S	I	E	V	A	R	H	K	A	L	R	A	M	N	I	A	F	G	I
Query Conservation
Alig confidence																													.																																		.	.	.	.	.	.	.
Template Conservation																													.																																		.	.	.	.	.	.	.
Template Sequence		L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	.	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	.	.	.	.	.	.	.	N	V	P	R	A	I	F	I	S	I	L	I
Template Known Secondary structure																	G	G	G	T	S				S				.											G	G	G	G	G	T							T	T	G	G	G	B	S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																													.																																		.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	V	T	V	F	F	Y	A	V	S	F	T	L	A	M	G	H	D	E	A	V	K	A	Y	E	Q	N	I	S	A	L	A	I	A	A	Q	F	I	S	G	D	G	A	A	W	V	K	V	V	S	V	I	L	N	I	F	A	V	M	T	A	F	F	G	V	Y	L	G	F	R	E	A	T	Q	G	I	V	M	N
Query Conservation
Alig confidence																													.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence		V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	.	.	.	.	.	.	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D
Template Known Secondary structure															T	T	S								T	G	G	G	.	.	.	.	.	.																																			T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	R	R	K	M	P	A	E	K	I	N	E	N	L	V	Q	R	G	I	M	I	F	A	I	L	L	A	W	S	A	I	V	L	N	A	P	V	L	S	F	T	S	I	C	S	P	I	F	G	M	V	G	C	L	I	P	A	W	L	V	Y	K	V	P	A	L	H	K	Y	K	G	M	S	L	Y	L	I	I	V
Query Conservation
Alig confidence																																				.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	.	.	.	.	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S	F	I
Template Known Secondary structure		S	S			S	S			T	T	S			S		T																	S		.	.	.	.																										T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.					340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	L	L	C	V	S	P	F	L	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	G	V	F	L	L	L	L	Y	Y	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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