Job Description P42628 Confidence 98.60% Date Thu Jan 5 12:01:58 GMT 2012 Rank 6 Aligned Residues 409 % Identity 10% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		R	A	G	M	S	E	S	E	W	R	E	A	I	K	F	D	S	T	D	T	G	W	V	I	M	S	I	G	M	A	I	G	A	G	.	I	V	F	L	P	V	Q	V	G	L	M	G	L	W	V	F	L	L	S	S	V	I	G	Y	P	A	M	Y	L	F	Q	R	L	F	I	N	T	L	A	E	S	P	E	C	K
Query Conservation																																				.
Alig confidence																						.	.													.														.																											.
Template Conservation																						.	.																											.																											.
Template Sequence		X	X	X	X	X	X	X	X	X	X	A	G	K	S	L	P	W	W	A	V	.	.	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	.	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	.	K	G	I	Y
Template Known Secondary structure														S								.	.										S					T									T		G	.	G	G																		T							.	T	T
Template Predicted Secondary structure																						.	.																											.																											.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	P	S	V	I	S	G	Y	L	G	K	N	W	G	I	L	L	G	A	L	Y	F	V	M	L	V	I	W	M	F	V	Y	S	T	A	I	T	N	D	S	A	S	Y	L	H	T	F	G	V	T	E	G	L	L	S	D	S	P	F	Y	G	L	V	L	I	C	I	L	V	A	I	S	S	R	G	E	K	L	L
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.
Template Sequence		T	I	P	E	F	V	E	K	R	F	N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	.	.	.	.	.	.	.	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T	D	V	I
Template Known Secondary structure		S									T																			T																	T	T			.	.	.	.	.	.	.															T	T				S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200															.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	K	I	S	T	G	M	V	L	T	K	L	L	V	V	A	A	L	G	V	S	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	W	H	L	Y	N	V	G	S	L	P	P	L	G	L	L	V	K	N	A	I	I	T	L	P	F	T	L	T	S	I	L	F	I	Q	T	L	S	P	M	V	I
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I
Template Known Secondary structure																							T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.							.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		S	Y	R	S	R	E	K	S	I	E	V	A	R	H	K	A	L	R	A	M	N	I	A	F	G	I	L	F	V	T	V	F	F	Y	A	V	S	F	T	L	A	M	G	H	D	E	A	V	K	A	Y	E	Q	.	.	.	.	.	.	N	I	S	A	L	A	I	A	A	Q	F	I	S	G	D	G	A	A	W	V	K
Query Conservation																																																							.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K
Template Known Secondary structure						S	S	S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	S	V	I	L	N	I	F	A	V	M	T	A	F	F	G	V	Y	L	G	F	R	E	A	T	Q	G	I	V	M	N	I	L	R	R	K	M	P	A	E	K	I	N	E	N	L	V	Q	R	G	I	M	I	F	A	I	L	L	A	W	S	A	I	V	L	N	A	P	V	L	S	F	T	S	I	C	S	P	I
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	.	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y
Template Known Secondary structure																															T						.		S		S		S	S																					G	G	G	G	G	G		S
Template Predicted Secondary structure																																					.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	M	V	G	C	L	I	P	A	W	L	V	Y	K	V	P	A	L	H	K	Y	K	G	M	S	L	Y	L	I	I	V	T	G	L	L	L	C	V	S	P	F	L
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	.	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F
Template Known Secondary structure			T	T	T															.	T	T																						T
Template Predicted Secondary structure																				.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.