Job Description P42628 Confidence 92.31% Date Thu Jan 5 12:01:58 GMT 2012 Rank 7 Aligned Residues 387 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.												.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	A	G	R	A	G	M	S	E	S	E	W	R	E	A	I	K	F	D	S	T	D	T	G	W	V	I	M	S	I	G	M	A	I	G	A	G	I	V	F	L	P	.	.	.	.	.	V	Q	V	G	.	.	.	.	.	.	.	.	.	.	.	L	M	G	L	W	V	F	L	L	S	S	V	I	G	Y	P	A
Query Conservation																																													.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.																						.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	E	F	R	.	.	.	.	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A
Template Known Secondary structure		S	G	G	G	G			S	S	S	T	T				S	S		.	.	.	.																															T			T	T	S		S	S														S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		79	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure					.																														.	.	.	.	.
Query SS confidence					.																														.	.	.	.	.
Query Sequence		M	Y	L	.	F	Q	R	L	F	I	N	T	L	A	E	S	P	E	C	K	D	Y	P	S	V	I	S	G	Y	L	G	K	N	.	.	.	.	.	W	G	I	L	L	G	A	L	Y	F	V	M	L	V	I	W	M	F	V	Y	S	T	A	I	T	N	D	S	A	S	Y	L	H	T	F	G	V	T	E	G	L	L
Query Conservation					.																														.	.	.	.	.
Alig confidence					.																														.	.	.	.	.
Template Conservation
Template Sequence		I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W
Template Known Secondary structure														T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.														.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	S	P	F	Y	G	L	V	L	I	C	I	L	V	A	I	S	S	.	.	.	R	G	E	K	L	L	F	K	I	S	T	G	M	V	L	T	K	L	L	V	V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	V	S	M	V	G	M	W	H	L	Y	N	V	G	S	L	P	P	L	G	L
Query Conservation																					.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G
Template Known Secondary structure														T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	K	N	A	I	I	T	L	P	F	T	L	T	S	I	L	F	I	Q	T	L	S	P	M	V	I	S	Y	R	S	R	E	K	S	I	E	V	A	R	H	K	A	L	R	A	M	N	I	A	F	G	I	L	F	V	T	V	F	F	Y	A	V	S	F	T	L	A	M	G	H	D	E	A	V	K	A	Y	E	Q
Query Conservation
Alig confidence											.	.																																																														.	.
Template Conservation											.	.																																																														.	.
Template Sequence		T	A	G	E	W	L	G	S	W	.	.	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	.	.	E	S	I	W	G	D
Template Known Secondary structure									T	T	.	.										T	T												T	T	T																																				T	.	.						T
Template Predicted Secondary structure											.	.																																																														.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	S	A	L	A	I	A	A	Q	F	I	S	G	D	G	A	A	W	V	K	V	V	S	V	I	L	N	I	F	A	V	M	T	A	F	F	G	V	Y	L	G	F	R	E	A	T	Q	G	I	V	M	N	I	L	R	R	K	M	P	A	E	K	I	N	E	N	L	V	Q	R	G	I	M	I	F	A	I	L	L
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	.	.	.	.	.	.	.	.	.	.	.	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I
Template Known Secondary structure		T		S										T	S	T	T																															T	T	T	.	.	.	.	.	.	.	.	.	.	.	T		S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.												.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		377	.	.	380	.	.	.	.	.					.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		A	W	S	A	I	V	L	N	A	.	.	.	.	P	V	L	S	F	T	S	I	C	S	P	I	F	G	M	V	G	C	L	I	P	A	W	L	V	Y	K	V	P	A	L	H	K	Y	K
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.
Template Conservation
Template Sequence		G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y
Template Known Secondary structure										G	G	G																																	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550