Job Description P77300 Confidence 98.85% Date Thu Jan 5 12:27:26 GMT 2012 Rank 17 Aligned Residues 182 % Identity 16% Template c2qufB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus Resolution 2.80 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		L	Q	I	L	D	L	F	N	E	Q	A	T	E	L	K	I	T	D	I	S	K	L	M	G	L	S	K	S	T	L	H	S	L	L	K	T	L	Q	L	H	G	Y	I	D	Q	N	P	E	N	G	K	.	.	.	Y	R	L	G	M	K	L	V	E	R	G	H	F	V	V	G	S	I	D	I	R	Q	K	A	K	G
Query Conservation																																																					.	.	.
Alig confidence											.	.																																									.	.	.
Template Conservation											.	.
Template Sequence		R	D	L	L	S	H	L	T	A	.	.	M	E	A	Y	F	S	L	L	S	S	K	V	S	V	S	S	T	A	V	A	K	H	L	K	I	M	E	R	E	G	V	L	Q	S	Y	Y	K	I	S	I	A	K	S	Y	V	F	T	L	T	P	E	M	F	W	Y	K	G	L	D	L	G	D	A	E	L	R	D	F	E
Template Known Secondary structure									T		.	.	T	T	T		S	S	S	S		S	S	S																T	T	T	S																			T	T										S
Template Predicted Secondary structure											.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.												.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	L	T	E	L	S	R	R	T	G	Q	T	T	H	L	G	I	L	D	G	R	E	G	V	Y	I	E	K	I	E	G	K	L	A	A	I	A	Y	S	R	I	G	R	R	L	P	V	H	A	T	A	I	G	K	V	L	I	A	W	L	.	.	.	.	.	.	.	.	.	.	.	G	E	A	E	L	N	A	L	L
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	L	S	G	L	D	T	E	P	S	T	L	K	E	M	I	T	D	F	I	K	A	N	K	E	L	E	K	V	L	E	A	F	K	T	I	E	S	Y	R	S	S	L	M	R	K	I	K	E	A	Y	L	K	E	I	G	D	M	T	Q	L	A	I	L	H	Y	L	L	L	N	G	R	A	T	V	E	E	L	S
Template Known Secondary structure					T	T	S		S				S																																										T	T	T			T	T												S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Y	Q	Y	T	T	F	T	P	A	T	L	A	S	R	E	A	L	M	S	A	L	A	Q	T	R	E	Q	G	Y	A	L	D	S	E	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	N	L	K	E	R	E	V	R	E	K	I	S	E	M	A	R	F	V	P	V	K	I	I	N	D	N	T	V	V	L	D	E	D	Q	I
Template Known Secondary structure					T															T	T	S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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