Job Description P32173 Confidence 99.87% Date Thu Jan 5 11:49:52 GMT 2012 Rank 39 Aligned Residues 182 % Identity 23% Template c3tqdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii Resolution 1.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		T	I	T	G	V	V	L	A	G	G	K	A	R	R	M	G	G	V	D	K	G	L	L	E	L	N	G	K	P	L	W	Q	H	V	A	D	A	L	M	T	Q	L	S	H	V	V	V	N	A	N	R	H	Q	E	I	Y	.	.	.	Q	A	S	G	L	K	V	I	E	D	S	L	A	D	Y	P	G	P	L	A	G
Query Conservation																																																										.	.	.
Alig confidence										.	.	.	.	.																																												.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		E	F	R	V	I	I	P	A	.	.	.	.	.	R	F	D	L	P	G	K	A	L	V	D	I	A	G	K	P	X	I	Q	H	V	Y	E	S	A	I	K	S	G	A	E	E	V	V	I	A	T	D	D	K	R	I	R	Q	V	A	E	D	F	G	A	V	V	C	X	T	S	S	D	H	Q	S	G	T	E	R	I
Template Known Secondary structure										.	.	.	.	.					T	T	G	G	G				T	T														T	T		S							S											T	T								T	T			S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	S	V	M	Q	Q	E	A	G	.	.	E	W	F	L	F	C	P	C	D	T	P	Y	I	P	P	D	L	A	A	R	L	N	H	Q	R	K	D	A	P	V	V	W	V	H	D	G	E	R	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	A	A	V	A	L	G	F	E	D	D	E	I	I	V	C	L	Q	G	D	E	P	L	I	P	P	D	A	I	R	K	L	A	E	D	L	D	E	H	D	K	V	A	S	L	C	T	P	I	T	E	V	D	E	L	F	N	P	H	S	T	K	V	V	L	N	R	R	N	Y	A	L	Y	F	S	H	A	P	I
Template Known Secondary structure								T	T			T	T								T	T																																				T		T	T	S							T	T	S	B						S	S		S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
																								133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	I	A	L	V	N	R	A	I	E	P	L	L	L	E	.	.	.	.	Y	L	Q	A	G	E	R	R	V	M	V	F	M	R	L	A	G	G	H	A	V	D	F	S	D	H	K	D	A	F	V	N	V	N	T	P	E	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		P	W	G	R	D	T	F	S	D	K	E	N	L	Q	L	N	G	S	H	Y	R	H	V	G	I	Y	A	Y	R	V	G	F	L	E	E	Y	L	S	W	D	A	C	P	A	E	K	X	E	A	L	E	Q	L	R	I	L	W	H	G	G	R	I	H	X	V	V	A	K	S	K	C	P	P	G	V	D	T	E	E	D
Template Known Secondary structure		S			T	T	T	T	T		G	G	G				S	S																						S										T		T	T						T	T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		187	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	W	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	R	V	R	A
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions