Job Description P76083 Confidence 99.64% Date Thu Jan 5 12:18:27 GMT 2012 Rank 50 Aligned Residues 210 % Identity 19% Template c3gg2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate Resolution 1.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		T	V	A	V	I	G	S	G	T	M	G	A	G	I	A	E	V	A	A	S	H	G	H	Q	V	L	L	Y	D	I	S	A	E	A	L	T	R	A	I	D	G	.	.	.	.	.	.	.	.	I	H	A	R	L	N	S	R	V	T	R	G	K	L	T	A	E	T	C	E	R	T	L	K	R	L	I	P	V	T	D
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	A	V	V	G	I	G	Y	V	G	L	V	S	A	T	C	F	A	E	L	G	A	N	V	R	C	I	D	T	D	R	N	K	I	E	Q	L	N	S	G	T	I	P	I	Y	E	P	G	L	E	K	M	I	A	R	N	V	K	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	L	R	F	G	T	E
Template Known Secondary structure									S													T	T								S										T	T			S	S			T	T											T	T	S	.	.	.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.													.	.	.	.	.	.
		79		80	.	.	.	.	.	.	.	.	.	90	.	.	.									.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.
Predicted Secondary structure			.															.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Query SS confidence			.															.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Query Sequence		I	.	H	A	L	A	A	A	D	L	V	I	E	A	A	S	.	.	.	.	.	.	.	.	E	R	L	E	V	K	K	A	L	F	A	Q	L	A	E	V	C	P	P	Q	T	L	L	T	T	N	T	S	S	I	S	I	T	A	I	A	A	E	I	K	N	P	E	R	.	.	.	.	.	.	V	A	G	L	H	F
Query Conservation			.															.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Alig confidence			.															.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	Q	A	V	P	E	A	D	I	I	F	I	A	V	G	T	P	A	G	E	D	G	S	A	D	M	S	Y	V	L	D	A	A	R	S	I	G	R	A	M	S	R	Y	I	L	I	V	T	K	S	T	V	P	V	G	S	Y	R	L	I	R	K	A	I	Q	E	E	L	D	K	R	E	V	L	I	D	F	D	I
Template Known Secondary structure						G	G	G		S										B		T	T	S	S	B																		S								S				T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
			144	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure		.													.	.	.	.	.	.	.	.																													.	.	.													.	.	.
Query SS confidence		.													.	.	.	.	.	.	.	.																													.	.	.													.	.	.
Query Sequence		.	F	N	P	A	P	V	M	K	L	V	E	V	.	.	.	.	.	.	.	.	V	S	G	L	A	T	A	A	E	V	V	E	Q	L	C	E	L	T	L	S	W	G	K	Q	P	V	R	C	.	.	.	H	S	T	P	G	F	I	V	N	R	V	A	.	.	.	R	P	Y	Y	S	E	A	W	R	A	L	E	E
Query Conservation		.													.	.	.	.	.	.	.	.																													.	.	.													.	.	.
Alig confidence		.													.	.	.	.	.	.	.	.																													.	.	.													.	.	.
Template Conservation
Template Sequence		A	S	N	P	E	F	L	K	E	G	N	A	I	D	D	F	M	K	P	D	R	V	V	V	G	V	D	S	D	R	A	R	E	L	I	T	S	L	Y	K	P	M	L	R	V	L	F	M	D	I	A	S	A	E	M	T	K	Y	A	A	N	A	M	L	A	T	R	I	S	F	M	N	D	V	A	N	L	C	E	R
Template Known Secondary structure										T	T	S							S		S							S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	A	A	P	E	V	I	D	A	A	L	R	D	G	A	G	F	P	M	G	P
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		V	G	A	D	V	S	M	V	R	L	G	I	.	.	G	S	D	S	R	I	G	S
Template Known Secondary structure			T											.	.		T	S	T	T	T		S
Template Predicted Secondary structure														.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions