Job Description P76083 Confidence 99.54% Date Thu Jan 5 12:18:27 GMT 2012 Rank 70 Aligned Residues 211 % Identity 16% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	Q	T	V	A	V	I	G	S	G	T	M	G	A	G	I	A	E	V	A	A	S	H	G	.	.	H	Q	V	L	L	Y	D	I	S	A	E	.	.	.	.	A	L	T	R	A	.	.	.	.	.	.	.	.	.	.	I	D	G	I	H	A	R	L	N	S	R	V	T	R	G	K	L	T	A	E	T	C	E
Query Conservation																											.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		P	I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	.	.	.	.	.	.	.
Template Known Secondary structure		S										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.											.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.										.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		R	T	L	K	R	L	I	P	V	T	D	I	H	A	L	A	A	A	D	L	V	I	E	A	A	S	.	.	.	.	.	.	.	.	.	.	E	R	L	E	V	K	K	A	L	F	A	Q	L	A	E	V	C	P	P	Q	T	L	L	T	T	N	T	S	S	I	S	.	.	.	.	.	.	.	.	.	I	T	A	I
Query Conservation																												.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	F	E	C	T	P	D	F	S	R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E
Template Known Secondary structure		.	.	.	.	.					S		G	G	G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.										.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.					.
Query SS confidence																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.					.
Query Sequence		A	A	E	I	K	N	P	E	R	V	A	G	L	H	F	F	N	P	A	P	V	M	K	.	.	.	.	.	.	.	.	.	L	V	E	V	V	S	G	L	A	T	A	A	E	V	V	E	Q	L	C	E	L	T	L	S	W	G	K	Q	P	V	R	C	H	S	T	P	G	.	.	.	.	.	.	F	I	V	N	.
Query Conservation																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.					.
Alig confidence															.	.									.	.	.	.	.	.	.	.	.								.	.																													.	.	.	.	.	.					.
Template Conservation															.	.																									.	.
Template Sequence		E	S	G	L	K	A	G	E	D	F	A	L	A	.	.	H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	.	.	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T
Template Known Secondary structure							B	T	T	T	B				.	.								T	T	S								S							.	.	S	S												G	G	G		S	S
Template Predicted Secondary structure															.	.																									.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
				193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	V	A	R	P	Y	Y	S	E	A	W	R	A	L	E	E	Q	V	A	A	P	E	V	I	D	A	A	L	R	D	G	A	G	F	P	M	G	P
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		F	R	D	L	Q	I	A	A	I	N	Q	L	A	L	Y	C	E	A	M	G	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R
Template Known Secondary structure																				T	T												T	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions