 |
Job Description | P76083 | Confidence | 99.11% | Date | Thu Jan 5 12:18:27 GMT 2012 |
Rank | 117 | Aligned Residues | 145 |
% Identity | 19% | Template | c3c7cB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:octopine dehydrogenase; |
PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
|
Resolution | 3.10 Å |
|
 |
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  | . |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Query Sequence |   |
T | V | A | V | I | G | S | G | T | M | G | A | G | I | A | E | V | A | A | S | H | . |
G | H | Q | V | L | L | Y | D | I | S | A | E | A | L | T | R | A | I | D | G | I | H | A | R | L | N | S | R | V | T | R | G | K | L | T | A | E | T | C | E | R | T | L | K | R | L | I | P | V | T | D | I | . |
H | A | L | A | A |
Query Conservation |   |
  |
|   |
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |
|   |   | . |
|   |   |
|   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|
|   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|
|   |   |
Template Sequence |   |
K | V | C | V | C | G | G | G | N | G | A | H | T | L | S | G | L | A | A | S | R | D | G | V | E | V | R | V | L | T | L | F | A | D | E | A | E | R | W | T | K | A | L | G | A | D | . |
E | L | T | V | I | V | N | E | K | D | G | T | Q | T | E | V | K | S | R | P | K | V | I | T | K | D | P | E | I | A | I | S | G |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T |  |  |  |  |  |  |
|
| S | T | T |  |  |  |  |  |  |  |  |  | T | T | S | . |
|  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |
|
| S |  |  |  | S |
|  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | L | V | I | E | A | A | S | E | R | L | E | V | K | K | A | L | F | A | Q | L | A | E | V | C | P | P | Q | T | L | L | T | T | N | T | S | S | I | S | I | T | A | I | A | A | E | I | . |
. |
K | N | P | E | R | V | A | G | L | H | F | F | N | P | A | P | V | M | K | L | V | E |
Query Conservation |   |
|
|
|
|
|
|
|
|   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |
|   |   |
|
|   |   |   | . | . |   |   |
|   |
|   |   |
|   |
|
|
|   |
|   |   |   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|
| . | . |
|   |   |   |   |   |
|
|   |   |
|
|
|   |
|   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |
|   |   |   |
Template Sequence |   |
A | D | V | V | I | L | T | V | P | . |
. |
A | F | A | H | E | G | Y | F | Q | A | M | A | P | Y | V | Q | D | S | A | L | I | V | G | L | P | S | Q | A | G | F | E | F | Q | C | R | D | I | L | G | D | K | A | A | A | V | S | M | M | S | F | E | T | L | P | W | A | C | R | I | K | E |
Template Known Secondary structure |   |
| S |  |  |  |  |
| S |
| . | . | G | G | G |  |  |  |  |  |  |  |  | T | T | T |
|
| T | T |
|  |  |  |  | T | T |
|
| S | S |  |  |  |  |  |  |  |  |  | G | G | G | G | G | T | S |  |  |  |  |  | S | S |
| S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | |
|
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|