Job Description P76083 Confidence 99.94% Date Thu Jan 5 12:18:27 GMT 2012 Rank 15 Aligned Residues 255 % Identity 15% Template c1vpdA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:tartronate semialdehyde reductase; PDBTitle: x-ray crystal structure of tartronate semialdehyde reductase2 [salmonella typhimurium lt2] Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		Q	T	V	A	V	I	G	S	G	T	M	G	A	G	I	A	E	V	A	A	S	H	G	H	Q	V	L	L	Y	D	I	S	A	E	A	L	T	R	A	I	D	G	I	H	A	R	L	N	S	R	V	T	R	G	K	L	T	A	E	T	C	E	R	T	L	K	R	L	I	P	V	T	D	I	.	H	A	L	A	A
Query Conservation																																																																												.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	K	V	G	F	I	G	L	G	I	X	G	K	P	X	S	K	N	L	L	K	A	G	Y	S	L	V	V	S	D	R	N	P	E	A	I	A	D	V	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	E	T	A	S	T	A	K	A	I	A	E	Q
Template Known Secondary structure										S	T	T											T	T								S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																										.	.	.
Query SS confidence																					.	.																										.	.	.
Query Sequence		A	D	L	V	I	E	A	A	S	E	R	L	E	V	K	K	A	L	F	.	.	A	Q	L	A	E	V	C	P	P	Q	T	L	L	T	T	N	T	S	S	I	S	I	T	A	I	.	.	.	A	A	E	I	K	N	P	E	R	V	A	G	L	H	F	F	N	P	A	P	V	M	K	L	V	E	V	V	S	G	L
Query Conservation																					.	.																										.	.	.
Alig confidence																					.	.																										.	.	.
Template Conservation
Template Sequence		C	D	V	I	I	T	X	L	P	N	S	P	H	V	K	E	V	A	L	G	E	N	G	I	I	E	G	A	K	P	G	T	V	L	I	D	X	S	S	I	A	P	L	A	S	R	E	I	S	D	A	L	K	A	K	G	V	E	X	L	D	A	P	V	S	G	G	E	P	K	A	I	D	G	T	L	S	V	X	V
Template Known Secondary structure			S							S	S										S	T	T								T	T							S																T	T	T										S								T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence		A	T	A	A	E	V	V	E	Q	L	C	E	L	T	L	S	W	G	K	Q	P	V	R	C	H	S	T	P	.	.	.	.	.	.	.	.	G	F	I	V	N	R	V	A	R	P	Y	Y	S	E	A	W	R	A	L	E	E	Q	V	A	A	P	E	V	I	D	A	A	L	R	D	G	A	G	F	P	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation
Template Sequence		G	G	D	K	A	I	F	D	K	Y	Y	D	L	X	K	A	X	A	G	S	V	V	H	T	G	D	I	G	A	G	N	V	T	K	L	A	N	Q	V	I	V	A	L	N	I	A	A	X	S	E	A	L	T	L	A	T	K	A	G	V	N	P	D	L	V	Y	Q	A	I	R	G	G	L	A	G	S	T	V	L	D
Template Known Secondary structure			S														T	T									S	T	T																														T	T											T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
			228	.	230	.	.	.	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.											.	.	.	.
Query SS confidence		.											.	.	.	.
Query Sequence		.	M	G	P	L	E	L	T	D	L	I	.	.	.	.	G	Q	D	V	N	F	A	V	T	C	S	V	F	N	A	F	W	Q	E	R	R	F	L	P	S	L	V	Q	Q	E	L	V	I	G	G	R	L	G	K	K	S	G	L	G	V	Y	D	W	R
Query Conservation		.											.	.	.	.
Alig confidence		.											.	.	.	.																		.	.
Template Conservation																																		.	.
Template Sequence		A	K	A	P	X	V	X	D	R	N	F	K	P	G	F	R	I	D	L	H	I	K	D	L	A	N	A	L	D	T	S	H	.	.	G	V	G	A	Q	L	P	L	T	A	A	V	X	E	X	X	Q	A	L	R	A	D	G	H	G	N	D	D	H	S
Template Known Secondary structure									T	T					S	S	B																	.	.			T																			T	T		T	T	S	B	G	G
Template Predicted Secondary structure																																		.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions