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Job DescriptionP76083
Confidence99.33%DateThu Jan 5 12:18:27 GMT 2012
Rank97Aligned Residues199
% Identity19%Templatec1dliA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the2 catalytic residues necessary for the two-fold oxidation
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40...... ...50.........60.........70......... 80.
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Query Sequence  TVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAID. . . . GIHARLNSRVTRGKLTAETCERTLKRLIPVTDI. HA
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Template Sequence  KIAVAGSGYVGLSLGVLLS. LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ. . . . . . . . . . LSIKATLDSKAA
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ST.TTS
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   2.......10.........20 .........30.........40.........50........ .60.........70
 
   82.......90.... .....100.........110.........120.........130.........140.........150..
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Query Sequence  LAAADLVIEAASE. . . . . . . . . RLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKL
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Template Sequence  YKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII. . . . FSPEFLRES
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   71........80.........90.........100.........110.........120.........130....... ..140......
 
   153......160.........170...... ...180......... 190.........200.......
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Query Sequence  . . . . . . . . . . . VEVVSGLATAAEVVEQLCELTLSW. . . . . . GKQPVRCHSTPGF. . . . . . . . IVNRVARPYYSEAWRALE
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Template Sequence  KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE
Template Known Secondary structure  STTS
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   147..150.........160.........170.........180.........190.........200.........210.........220......
 
   208.210.........220
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Query Sequence  EQVAAPEVIDAAL
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Template Sequence  SRKLNSHMIIQGI
Template Known Secondary structure  TT

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   227..230.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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