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Job DescriptionP0AGM5
Confidence99.62%DateThu Jan 5 11:29:31 GMT 2012
Rank51Aligned Residues246
% Identity10%Templatec3mv3B_
PDB info PDB header:protein transportChain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop
Resolution3.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.... ..
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Query Sequence  EFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSLAKEEISQLLPLEEQLEKLIA. . . . . . . . . . . . . . . . . . . . . LF
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Template Sequence  NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYE
Template Known Secondary structure  TTT
TSTT


SS





S
STTTSS

TTTTS


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   910.........20.........30.........40.........50.........60.........70.........80........
 
   67..70.........80.........90... ......100.........110.........120.........130.........140....
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Query Sequence  YGDWGFKASRGVYRLSDALWLDQVLKN. . RQGSAVSLGAVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNG
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Template Sequence  LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG. . . . . . . DNE
Template Known Secondary structure  T
TTTTSSSTT
TT
TTT

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   8990.........100.........110.........120.........130.........140.........150........ .160.
 
   145....150.........160.........170.........180.........190.........200.........210....
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Query Sequence  ESLSEHMLDVWLKGNISPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPED. . . . . . . . . .
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Template Sequence  XILNLAESYIKFATNKETATSNFYYYEELSQTFP. TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK
Template Known Secondary structure 
TTTTTS
.STT
STTT
TT
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   162.......170.........180.........190..... ....200.........210.........220.........230.........240
 
   215....220.........230.........240.........250.........260...
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Query Sequence  PYEIRDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAH
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Template Sequence  PTFLANQITLALXQGL. . DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDE
Template Known Secondary structure  TT
..TTTT

S
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   241........250...... ...260.........270.........280.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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