Job Description P0AGM5 Confidence 99.88% Date Thu Jan 5 11:29:31 GMT 2012 Rank 5 Aligned Residues 262 % Identity 12% Template c3iegB_ PDB info PDB header:chaperone Chain: B: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of p58(ipk) tpr domain at 2.5 a Resolution 2.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		S	L	A	D	F	E	F	N	K	A	P	L	C	E	G	M	I	L	A	C	E	A	I	R	R	D	F	P	S	Q	D	V	Y	D	E	L	E	R	L	V	S	L	A	K	E	E	I	S	Q	L	L	P	L	E	E	Q	L	E	K	L	I	A	L	F	.	.	Y	G	D	W	G	F	K	A	S	R	G	V	Y	R
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		E	L	G	K	K	L	L	A	A	G	Q	L	A	D	A	L	S	Q	F	H	A	A	V	D	G	D	P	D	N	Y	I	A	Y	Y	R	R	A	T	V	F	L	A	X	G	K	S	K	A	A	L	P	D	L	T	K	V	I	A	L	K	X	D	F	T	A	A	R	L	Q	R	G	H	L	L	L	K	Q	G	K	L
Template Known Secondary structure										T	T																	T	T															T	T																	T	T																T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	A	L	W	L	D	Q	V	L	K	N	R	Q	G	S	A	V	S	L	G	A	V	L	L	W	V	A	N	R	L	D	L	P	L	L	P	V	I	F	P	T	Q	L	I	L	R	I	E	C	P	D	G	E	I	W	L	I	N	P	F	N	G	E	S	L	S	E	H	M	L	D	V	W	L	K	G	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	A	E	D	D	F	K	K	V	L	K	S	N	P	S	E	Q	E	E	K	E	A	E	S	Q	L	V	K	A	D	E	X	Q	R	L	R	S	Q	A	L	D	A	F	D	G	A	D	Y	T	A	A	I	T	F	L	D	K	I	L	E	V	C	V	W	D	A	E	L	R	E	L	R	A	E	C	F	I	K	E
Template Known Secondary structure													T	T																																	T	T														T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	S	A	E	L	F	Y	E	D	L	D	E	A	D	N	I	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	P	R	K	A	I	S	D	L	K	A	A	S	K	L	K	S	D	N	T	E	A	F	Y	K	I	S	T	L	Y	Y	Q	L	G	D	H	E	L	S	L	S	E	V	R	E	C	L	K	L	D	Q	D	H	K	R	C	F	A	H	Y	K	Q	V	K	K	L	N	K	L	I	E	S	A	E	E	L	I	R	D
Template Known Secondary structure		T															S		S																	T																	T	T																											T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
																									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	K	L	L	D	T	L	K	A	S	L	M	E	E	N	Q	M	E	L	A	L	R	T	S	E	A	L	L	Q	F	N	P	E	D	P	Y	E	I	R	D	R	G	L	I	Y	A	Q	L	D	C	E	H	V	A	L	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	Y	T	D	A	T	S	K	Y	E	S	V	X	K	T	E	P	S	V	A	E	Y	T	V	R	S	K	E	R	I	C	H	C	F	S	K	D	E	K	P	V	E	A	I	R	I	C	S	E	V	L	Q	X	E	P	D	N	V	N	A	L	K	D	R	A	E	A	Y	L	I	E	E	X	Y	D	E	A	I	Q
Template Known Secondary structure		T																S		S																			T	T																	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	S	Y	F	V	E	Q	C	P	E	D	P	I	S	E	M	I	R	A	Q	I	N	N	I	A	H	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Y	E	A	A	Q	E	H	N	E	N	D	Q	Q	I	R	E	G	L	E	K	A	Q	R	L	L	K	Q
Template Known Secondary structure								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions