Job Description P0AGM5 Confidence 99.33% Date Thu Jan 5 11:29:31 GMT 2012 Rank 84 Aligned Residues 187 % Identity 10% Template c2yhcA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli Resolution 1.80 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		I	A	L	F	Y	G	D	W	G	F	K	A	S	R	G	V	Y	R	L	S	D	A	L	W	L	D	Q	V	L	K	N	R	Q	G	S	.	.	.	A	V	S	L	G	A	V	L	L	W	V	A	N	R	L	D	L	P	L	L	P	V	I	F	P	T	Q	L	I	L	R	I	E	C	P	D	G	E	I	W	L	I
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		P	P	N	E	I	Y	A	T	A	Q	Q	K	L	Q	D	G	N	W	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	L	P	L	A	Q	A	A	I	D	R	F	I	R	L	N	P	T	H	P	N	I	D	Y	V	M	Y
Template Known Secondary structure																	T																	T	T	S	T	T															T	T																	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		140										.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	.	.	.	.	P	F	N	G	E	S	L	S	E	H	M	L	D	V	W	L	K	G	N	I	S	P	S	A	E	L	F	Y	E	D	L	D	E	A	D	N	I	E	V	I	R	K	L	L	D	T	L	K	A	S	L	M	E	E	N	Q	M	E	L	A	L	R	T	S	E	A	L	L	Q	F
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	G	L	T	N	M	A	L	D	D	D	P	Q	Q	A	R	A	A	F	S	D	F	S	K	L	V	R	G	Y	P	N	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E	Y	S	V	A	E	Y	Y	T	E	R	G	A	W	V	A	V	V	N	R	V	E	G	M	L	R	D
Template Known Secondary structure																													T	T		T	T		T	T																														T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		211	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		N	P	E	D	P	Y	.	.	.	E	I	R	D	R	G	L	I	Y	A	Q	L	D	C	E	H	V	A	L	N	D	L	S	Y	F	V	E	Q	C	P	E	D	P
Query Conservation								.	.	.
Alig confidence								.	.	.
Template Conservation
Template Sequence		Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	M	Q	M	N	A	Q	A	E	K	V	A	K	I	I	A	A	N	S	S	N	T	L
Template Known Secondary structure		S	T	T	S																	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions