Job Description P0AGM5 Confidence 80.95% Date Thu Jan 5 11:29:31 GMT 2012 Rank 124 Aligned Residues 56 % Identity 9% Template c2v6xA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4 Resolution 1.98 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	L	A	L	R	T	S	E	A	L	L	Q	F	N	P	E	D	P	Y	E	I	R	D	R	G	L	I	Y	A	Q	L	D	C	E	H	V	A	L	N	D	L	S	Y	F	V	E	Q	C	P	E	D	P	I	S	E	M	I	R	A	Q	I	N	N
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		L	T	K	G	I	E	L	V	Q	K	A	I	D	L	D	T	A	.	.	.	.	.	.	.	.	T	Q	Y	E	E	A	Y	T	A	Y	Y	N	G	L	D	Y	L	X	L	A	L	K	Y	E	K	N	P	K	S	K	D	L	I	R	A	K	F	T	E
Template Known Secondary structure																		T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.									.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions