Job Description P0AGM5 Confidence 99.61% Date Thu Jan 5 11:29:31 GMT 2012 Rank 53 Aligned Residues 246 % Identity 7% Template c2uy1A_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:cleavage stimulation factor 77; PDBTitle: crystal structure of cstf-77 Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	L	A	D	F	E	F	N	K	A	P	L	C	E	G	M	I	L	A	C	E	A	I	R	R	D	F	P	S	Q	D	V	Y	D	E	L	E	R	L	V	S	L	A	K	E	E	I	S	Q	L	L	P	L	E	E	Q	L	E	K	L	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	E	E	G	K	I	E	D	E	Q	T	R	I	E	K	I	R	N	G	Y	M	R	A	L	Q	T	P	M	G	S	L	S	E	L	W	K	D	F	E	N	F	E	L	E	L	N	K	I	T	G	K	K	I	V	G	D	T	L	P	I	F	Q	S	S	F	Q	R	Y	Q	Q	I	Q	P	L	I	R	G	W	S
Template Known Secondary structure					T	S	S		S	S																	T	S			T	T																																															T		S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
										65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	F	Y	G	D	W	G	F	K	A	S	R	G	V	Y	R	L	S	D	A	L	W	L	D	Q	V	L	K	N	R	Q	G	S	A	V	S	L	G	A	V	L	L	W	V	A	N	R	L	D	L	P	L	L	P	V	I	F	P	T	Q	L	I	L	R	I	E	C	P	D	G	E	I
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	N	A	A	R	L	I	D	L	E	M	E	N	G	M	K	L	G	G	R	P	H	E	S	R	M	H	F	I	H	N	Y	I	L	D	S	F	Y	Y	A	E	E	V	Y	F	F	Y	S	E	Y	L	I	G	I	G	Q	K	E	K	A	K	K	V	V	E	R	G	I	E	M	S	D	G	M	F	L	S	L	Y
Template Known Secondary structure														T		T	T																						T	T	T															T	T																		S	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		137	.	.	140	.	.	.	.	.	.	.															.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	L	I	N	P	F	N	G	E	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	H	M	L	D	V	W	L	K	G	N	I	S	P	S	A	E	L	F	Y	E	D	L	D	E	A	D	N	I	E	V	I	R	K	L	L	D	T	L	K	A	S	L	M	E	E	N	Q	M	E	L	A	L	R
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	L	V	M	D	E	E	A	V	Y	G	D	L	K	R	K	Y	S	F	S	K	E	L	D	L	L	R	I	N	H	L	N	Y	V	L	K	K	R	G	L	E	L	F	R	K	L	F	I	E	L	G	N	E	G	V	G	P	H	V	F	I	Y	C	A	F	I	E	Y	Y	A	T	G	S	R	A	T	P	Y	N
Template Known Secondary structure						T	T		T										T																																		T	T	S																					S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	E	A	L	L	Q	F	N	P	E	D	P	Y	E	I	R	D	R	G	L	I	Y	A	Q	L	D	C	E	H	V	A	L	N	D	L	S	Y	F	V	E	Q	C	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	S	S	G	L	L	K	H	P	D	S	T	L	L	K	E	E	F	F	L	F	L	L	R	I	G	D	E	E	N	A	R	A	L	F	K	R	L	E	K	T	S	R
Template Known Secondary structure											T	T																T												S			B
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions